Showing 2867 open source projects for "research"

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  • 1
    scipion-xmipp

    scipion-xmipp

    Image processing framework to integrate EM software packages.

    Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3DEM). It integrates several software packages and presents an unified interface for both biologists and developers. Scipion allows to execute workflows combining different software tools, while taking care of formats and conversions. Additionally, all steps are tracked and can be reproduced later on. Xmipp is a well-known package in the EM image processing. It is integrated...
    Downloads: 0 This Week
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  • 2
    PanelCheck is an easy-to-use software tool for visualization of sensory profiling data using different types of plots. The joint information from the implemented plots provide detailed insight into assessor and panel performance.
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    Downloads: 162 This Week
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  • 3

    Fluid2D

    Fluid2D is the Swiss army knife of 2D CFD

    Fluid2D allows to study a wide variety of 2D flows. It is written entirely in Python. It is both a teaching code and a research code, capable of running from one core to thousands. Its numerics has been chosen to yield to as small dissipation as possible allowing to simulate easily high Reynolds flows, much higher than any of its concurrents. High performances are achieved by writting most of the operations as matrix-vector multiplications, handled by numpy that itself relies on the highly optimized BLAS.
    Downloads: 0 This Week
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  • 4

    CSV F-Curve Importer for Blender

    This is a Python script to import a CSV file to Blender f-curves.

    This is a Python script for Blender 2.5x and it imports a CSV file into Blender and creates f-curves. This project has just started, please wait for a while. Please go to the page given below for the information of how to start to use this and its details.
    Downloads: 0 This Week
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  • 5

    binana

    BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz

    BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at...
    Downloads: 0 This Week
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  • 6
    PyMod

    PyMod

    (OBSOLETE) PyMOL Plugin for Homology Modeling of Protein Structures

    This is the UNOFFICIAL mirror to PyMod. Since the release of PyMod2.0, this repository will no longer be maintained.
    Downloads: 4 This Week
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  • 7
    MicrobeGPS

    MicrobeGPS

    The Explorative Taxonomic Profiling Tool for Metagenomic Data

    MicrobeGPS is a bioinformatics tool for the analysis of metagenomic sequencing data. The goal is to profile the composition of metagenomic communities as accurately as possible and present the results to the user in a convenient manner. One main focus is reliability: the tool calculates quality metrics for the estimated candidates and allows the user to identify false candidates easily.
    Downloads: 0 This Week
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  • 8

    pipasic

    pipasic: Protein Abundance Correction in Metaproteomic Data

    Metaproteomic analysis allows studying the interplay of organisms or functional groups and has become increasingly popular also for diagnostic purposes. However, difficulties arise due to the high sequence similarity between related organisms. Further, the state of conservation of proteins between species can be correlated with their expression level which can lead to significant bias in results and interpretation. These challenges are similar but not identical to the challenges arising in...
    Downloads: 0 This Week
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  • 9

    fitGCP

    Fitting genome coverage distributions with mixture models

    Genome coverage, the number of sequencing reads mapped to a position in a genome, is an insightful indicator of irregularities within sequencing experiments. While the average genome coverage is frequently used within algorithms in computational genomics, the complete information available in coverage profiles (i.e. histograms over all coverages) is currently not exploited to its full extent. Thus, biases such as fragmented or erroneous reference genomes often remain unaccounted for....
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  • 10
    *WARNING* gtburst moved to github (https://github.com/giacomov/gtburst). ########################################## gtBurst is a tool to download data, analyze and simulate Gamma-ray Bursts and Solar Flares as observed by the NASA Fermi satellite.
    Downloads: 0 This Week
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  • 11
    Pymedia is a C/C++/Python multimedia module to allow encode/decode/play multimedia information in mp3,ogg,avi etc. formats. Based on ffmpeg with added features and simple Python interface. To be used in multimedia apps written in Python.
    Downloads: 4 This Week
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  • 12
    This project provides a Fortran90 library and a python module for singular spectrum analyses such as PCA/EOF or MSSA. It is intended for people interested, for example, in analysing climate or financial variability.
    Downloads: 0 This Week
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  • 13
    MetaNet

    MetaNet

    Free portable library for meta neural network research

    MetaNet provides free library for meta neural network research. MetaNet library contain feed-forward neural net realisation and several integrated dataset (MNIST).
    Downloads: 0 This Week
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  • 14
    Community Linux

    Community Linux

    USB Drive Writable Linux Distribution

    Community Linux is a USB drive based fully functional writable Linux Distribution. It boots and runs with a comparable speed as a hard drive installation. Community Linux allows one to create a low cost solid state development and production platform. For new ComLin drive creation, one needs to download the full install (comlin-016.tar.gz) ... (not just the scripts) Update: Community Linux will now run on most every machine. Update: Added Sound drivers, Intelligent...
    Downloads: 1 This Week
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  • 15

    SCaVis

    Scientific Computation and Visualization Environment

    SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential...
    Downloads: 0 This Week
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  • 16
    xmipp

    xmipp

    Image processing suite for Electron Microscopy

    XMIPP is an image processing suite for 3D-reconstruction of biological specimens from transmission electron microscopy data. NOTE that stable releases (including binaries) are longer stored at Sourceforge, but are available at http://xmipp.cnb.csic.es
    Downloads: 0 This Week
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  • 17

    KEMP

    A FDTD solver for electromagnetic wave simulations on a GPU cluster

    KEMP is a fast FDTD solver on a GPU-based cluster. The FDTD (Finite-Difference Time-Domain) method is a popular numerical method for electromagnetic field simulations. KEMP enables hardware accelerations suitable for multi-GPU, multi-core CPU and GPU cluster. KEMP also provide easy configuration by using Python scripting language.
    Downloads: 0 This Week
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  • 18
    ostis
    OSTIS - Open Semantic Technology for Intelligent Systems. This is an open project focused on mass semantic technology creation used in component-based design of various intelligent systems.
    Downloads: 3 This Week
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  • 19
    ccwatcher

    ccwatcher

    A computational chemistry monitoring, parsing and plotting application

    ccwatcher monitors the progress of computational chemistry calculations during runtime. It has both a GUI and a "Command Line Interface" to which it parses important output and plots SCF energies.
    Downloads: 0 This Week
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  • 20

    Valence

    Fast, Dynamic, and Extendable/Mergeable Workflow Management System

    Agile protocol development and workflow management of pipelines. Simple enough for a low barrier of entry, but powerful enough to manage large procedures. Includes APIs in Python, Ruby, Java, and Perl to assist in the creation of Drivers that can create new workflows on the fly. Greatly facilitates merging and extending pipelines between groups/developers.
    Downloads: 0 This Week
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  • 21
    Research Master

    Research Master

    wxpython research organization tool with LaTeX flashcards

    ResearchMaster is a tool that you can trust to help with organization, multitasking, and research. ResearchMaster provides a place to capture your fleeting thoughts and ideas, and it allows you to hit-the-ground-running on projects.
    Downloads: 0 This Week
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  • 22
    PhyloTrack

    PhyloTrack

    PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples

    PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting...
    Downloads: 2 This Week
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  • 23
    MicroView
    MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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    Downloads: 14 This Week
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  • 24
    psignifit is a toolbox to fit psychometric functions and test hypotheses on psychometric data. This is version 3 which will now predominantly support python.
    Downloads: 2 This Week
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  • 25

    SimpleAstroCapture

    Serial Camera Trigger and Dithering by PHD for use in astrophotography

    This program allows users to control their camera triggers via the bulb function and a serial cable trigger. The program has a manual mode (start and stop exposure with a button), a timer mode (program exposure time, number, and delay between exposures) and dither mode (program exposure time, number, and dither between shots using PHD guiding). More options may be added in the future. Currently uses an intuitive Graphical User Interface.
    Downloads: 0 This Week
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