Search Results for "raw data viewer" - Page 5
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Showing 144 open source projects for "raw data viewer"
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Fielddata Mgr
Land survey field crew data management for .RAW and .JOB file types.
Fielddata Mgr Overview This is a Python program, which means that one must install the open source freely available Python interpreter and a few required also open source, freely available modules that support the functionality of the program. The program "Fielddata Mgr", is customized for the Rick survey department, in such that it supports up to 9 chiefs, each having their own folder in one location, 2 supervisers, each with a PC on the network, and access to a main... -
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Py3DN
Morphometric analysis and visualization of the 3D structure of neurons
...The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data. Py3DN is described in the paper: Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403 doi: 10.1007/s12021-013-9188-z -
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This program written in Python is used for capture screenshot or raw data from a UNI-T digital storage oscilloscope.
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in... -
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pyQPCR is a GUI application written in python that deals with quantitative PCR (QPCR) raw data. Using quantification cycle values extracted from QPCR instruments, it uses a proven and universally applicable model to give finalized quantification resu
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anontwi
AnonTwi: tool to have more privacy on social networking sites related
AnonTwi provides you: + AES + HMAC-SHA1 encryption on Tweets and Direct Messages + Secure Sockets Layer (SSL) to interact with API + Proxy Socks (for example, to connect to the TOR network) + Random HTTP header values + Send long messages splitted automatically + Automatic decryption of tweet's urls or raw inputs + Backup messages to your disk (max: 3200) + Send fake geolocation places + Remove data and close account (suicide!) + View global Trending Topics + UTF-8 + Unicode support (chinese, arabic, symbols, etc) + Multiplatform: GNU/Linux, MacOS, Win32 + Detailed colourful output results + Generate tools and modules + GTK+ interface + An IRC bot slave + [...] ... -
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QuickNXS
Polarized ToF reflectivity raw data analysis tool
Data evaluation tool for the magnetism reflectometer at the spallation neutron source (BL-4A@SNS). Reads raw nexus files (HDF5) of histogrammed or event mode data to create reflectivity curves and 2D Q-maps. -
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Yang XML viewer
PyGtk2-based application that shows Yang-models as Treeview
The application uses 'pyang' for creating a XML file and displaying the Yang-model in a Treeview. Additionally it allows to send Netconf requests to a configured target. For this purpose, it uses the Netconf client from [1] or can use an external console too. [1] https://github.com/tail-f-systems/JNC/blob/master/examples/2-junos/netconf-console -
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PangView
Text Viewer that displays text similar to pango
A text viewer utility that displays text in a pango like markup. The utility is written in python, and uses the pygtk toolkit. The parser reads pango tags similar to html. The utility was written, so formatted text can be displayed quickly. NEW! The parser now is updated to use a faster method of internal data structure. -
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MicroView is a 2D/3D image viewer and analysis tool. It is written in Python and uses VTK for all of its graphical capabilities.
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Vibeplot presents a new and attractive way to visualize vibrational analysis from density functional calculations (DFT). It is especially targeted at the chemists. The interface can either be scripted or used interactively with QVibeplot.
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Protospacer
Rapid gRNA design and validation for CRISPR
...From here, users are able to evaluate potential off targeting, to export results in FASTA format or tabulated (e.g. for Microsoft Excel), and to connect to the Integrative Genomics Viewer (IGVref) and view target-sites in the context of genomic annotations, amino acid translations, and HT-Seq data (for off-target validation). We provide online video tutorials and a toy database from our main website. -
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Importer library to import assets from different common 3D file formats such as Collada, Blend, Obj, X, 3DS, LWO, MD5, MD2, MD3, MDL, MS3D and a lot of other formats. The data is stored in an own in-memory data-format, which can be easily processed. www.open3mod.com/ is a 3D model viewer and exporter based on Assimp that is also Open Source.
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Darkfall Emulator
Develop an emulated Darkfall Online Server.
This project is the development of an open source fully emulated Darkfall Online Server and reverse engineering the proprietary game engine that DFO uses, the SF3D engine as well as its source code. -
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WebChemViewer
A simple program for sharing molecular structures with associated data
Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the... -
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RDS Surveyor is an RDS/RBDS decoding, monitoring and analysis tool and library. It has migrated to GitHub: https://github.com/ChristopheJacquet/RdsSurveyor/
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HPe-rc
HPe-rc is a command-line utility for the Uniden HomePatrol-1 scanner.
HPe-rc is a command-line utility for the Uniden HomePatrol scanner with the Extreme Upgrade. All functions of the published remote control specification (2.05) are implemented, including downloading audio files and reading raw discriminator data. -
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ScreenSifter
ScreenSifter is a unique tool for RNAi Screen analysis and management
ScreenSifter can help you in managing all your RNAi screens related projects in organized fashion. ScreenSifter, to perform the sequential, user friendly, guided, and advanced statistical analyses of RNAi screening results. User can upload their raw signal intensities and will avail complete quality control of screen, hit selection, plotting of hit genes with gene ontology, comparing of replicates or comparing of channels. In addition, ScreenSifter has visualization tools to plot specific genes or gene groups in the screen data. ScreenSifter also provides Gene Set Enrichment Analysis (GSEA), protein-protein interaction directly on the plot. ... -
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ReadWrapper is a Python toolset to prepare and package raw sequencing data ("reads") for submission to the Sequence Read Archive (SRA, http://trace.ncbi.nlm.nih.gov/Traces/sra/).
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ResistPy
Geophysical Modelling with R2/R3
ResistPy is a Python program designed to work with R2 & R3t for processing, modelling & visualization of electrical resistivity data. ResistPy reads a variety of raw data formats and helps the user prepare the data for modelling with R2 or R3. -
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SpiKeDeteKt
An automatic spike detection program to be used with new KlustaKwik
This is an automatic spike detection program which takes account of probe geometry and produces a .mask file to be used with the new masked version of KlustaKwik. We recommend you use Python 2.6 or 2.7, e.g. a free academic version can be obtained from Entthought Python. The input files for SpiKeDeteKt are: .dat (raw data file) .probe (probe file, described below - user constructed) parameters.py (optional - otherwise it uses defaultparameters.py) SpiKeDeteKt outputs the following files: .fet.n (feature file) .mask.n (needed for using the new (masked) KlustaKwik) .clu.n (a trivial clue file where everything is put into a single cluster) .fmask.n (trial - float masks instead of binary, we are using this for testing masked KlustaKwik) .spk.n (spike file) .upsk.n (unfiltered spike waveform) .res.n (list of spike times) .xml (an xml file with all the parameters that can subsequently be used by neuroscope or klusters) .fil (highpass filtered data) .h5 ( -
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u/sbmv2012
Taxonomy assignment of metazoans using a python based pipeline
The aim of this project is to create an automated pipeline for taxonomic assignment of DNA sequences obtained from environmental samples. We develop a series of python scripts to process the raw sequence data obtained from benthic environmental samples and to taxonomical assignment of these sequences and finally to integrate all data in a relational database. -
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Geo-Spatial Data Viewer (GSDView) is a lightweight viewer for geo-spatial data and products. It is written in python and Qt4 and uses the GDAL library. GSDView is modular and has a simple plug-in architecture.
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