Search Results for "data structures" - Page 5
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Showing 138 open source projects for "data structures"
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ASN.1 types and codecs (BER, CER, DER) implementation in Python programming language. A collection of various ASN.1-based protocols data structures is supplied in a dedicated Python package. Project moved to GitHub: https://github.com/etingof/pyasn1
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NanoCap
Carbon Fullerene and Capped Nanotube Generator
NanoCap is a generic application for the construction of low energy fullerene and capped nanotube structures. It provides an ideal tool to accompany the study of finite carbon molecules using computer simulation. The implementation involves a standalone application which includes a GUI and allows for dynamic visual inspection through 3D rendering. In addition, the NanoCap core libraries can be used in custom Python scripts that enabled the user to produce structures in bulk or to include the... -
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WebChemViewer
A simple program for sharing molecular structures with associated data
Sharing lists of molecular structures with associated chemical properties is a common task in computer-aided drug design and medicinal chemistry. WebChem Viewer is a simple, free, open-source program that generates HTML-formatted output that can be viewed in any modern web browser, on any operating system (including mobile), without requiring the installation of additional software. The output can also be easily incorporated into existing web pages. WebChem Viewer is released under the... -
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OpenCMISS-Zinc
A Library for Interactive Modelling and Visualisation
...Models are represented in Zinc as mathematical fields defined over domains, including finite elements with support for high-order basis functions, complex parameter mappings and time variation, and image-based fields. Further fields can be defined by mathematical expressions and algorithms on existing fields, including image processing filters. Zinc model data structures are dynamic, supporting interactive applications which programmatically create, destroy and modify parts of models. -
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allink
Software for data analysis, image processing, simulations, solver.
...Matematica) performs math operations on vectors and matrices for smoothing, interpolation, convolution, image processing... VarData) manipulate a structure of points connected by links. Addraw) openGL engine. ElPoly) analyze mechanical properties of polymer and membrane like structures. Addyn) perform molecular dynamics and Monte Carlo simulations and has a solver for 4th oder PDE. Avvis) perform all the operation of Matematica on different sets of data visualized on a Qt graphical interface. DrImage) image manipulation on the Matematica filters. The program is intended to use as less as possible external libs (optional: openGL, gsl, fftw, cgal, png, tiff, boost, MPI, Qt...). -
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PyGAO
Genetic Algorithm Optimization for Python
A simple interface for performing genetic algorithm optimization for numerical problems. I am starting with a stripped-down version, where a solution can be described using a single vector of float numbers. Eventually, I will expand to more generic data structures and add multiple-species search options. For the time being, I have no plans of developing a GUI. For now, this is strictly a computational module. In addition to the standard Python libraries, PyGAO uses numpy. -
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CAPLET
GDS visualization and parallelized capacitance extraction
Project CAPLET is a capacitance extraction toolkit that extract capacitance at field-solver accuracy. CAPLET can directly handle GDS2 layout files into capacitance matrices in both GUI and command line interfaces. The internal extraction algorithm is specialized for VLSI interconnect structures but not exclusively, as long as the structure is of Manhattan geometry and embedded in a uniform dielectric material. -
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ParaSim
Parallelized calculation of molecular similarities
Diversity assessments and comparisons of large compound databases require calculating similarities of millions of compounds in an affordable time. ParaSim addresses this challenge by parallelizing the calculations according to the number of computing cores available on a single machine. It is optimized for the throughput of very large numbers of query structures against very large numbers of reference structures. As as special feature, ParaSim allows to store and and to access frequently... -
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Construct is a python module for bit-level, symmetrical parsing and building of data structures. Complex constructs are formed by a hierarchy of less-complex constructs, as well as user-defined constructs.
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PyGCF
Process GURPS Character Assistant GCF files to Python structures
The GURPS Character Assistant program stores its core data as GCF files. These files contain a descriptions of entities and relationships, commands for manipulating them and rules on how to satisfy constraints. Unfortunately, said program is only available for Windows, doesn't support any kind of automation for generation of NPCs, doesn't function under WINE, and is very, very slow. This module is intended to provide a basis for rectifying those problems. -
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PyLibrary
Libraries for Python developers.
Development in Python (be it website or an App development or implementation of an automation framework) always involves certain operations like handling db queries, operations on web, development of data structures, windows operations (handing services, registries), logging and many more... What, if you have these libraries handy with you all the time? Just import and start using them.. In comes PyLibrary.. PyLibrary is a collection of infrastructure libraries that aid faster development in Python. These libraries are well documented, provide robust error handling and are frequently updated/tested for improvements. ... -
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Assignment Collector/Grader
A webapp that collects and grades student labs
Assignment Collector/Grader (what a mouthful!) was conceived in 2010 as a way to reduce the workload of an over-worked professor teaching a CS data structures class. It proved not only to reduce the grading workload, but also improved the lab completion rates among students, and grades overall improved as a result. Since it has turned out to be such a successful tool, it is now released under the AGPL license for others to use in their classrooms. Planned improvements include: automatic plagiarism detection, making the student interface prettier, and supporting other testing frameworks and languages. -
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pyFormex is a program for generating, transforming and manipulating large geometrical models of 3D structures by sequences of mathematical operations.
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A python library for parsing and building of data structures (binary or textual). It is based on the concept of defining data structures in a declarative manner, where complex structures are composed of a hierarchy of simpler ones.
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sqlamp is an implementation of an efficient algorithm for working with hierarchical data structures — Materialized Path. sqlamp uses (and depends of) SQLAlchemy.
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qenqote
Clipboard Quote Encoder
...qenqote applies a user-selected quoting function, and writes the result back to the clipboard. Besides its URL transformation applications, qenqote can be given a variable name from which it produces text of "for (...) { }" or "while (...) { }" structures; can produce formatted dates or strings according to clipboard and other data; can put HTML tags around clipped text; can apply regular-expression substitutions to text; and can output any simple function one cares to program. -
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Tentacles is a Object-Relational Mapping (ORM) written in Python. It's main concept is to manipulate stored datas as you do for python data structures.
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Reviewing memory allocation and data structures of an extant Sourceforge project unix-named "simupop". A new development version of the extant project is established and the ultimate goal is to "rev up" the old, hence the project name.
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This is intended to ease the development of web applications using CherryPy (web server) and Elixir (DB access) with python. It will contain structures to easily setup the database structure and populate with data, and to configure the server
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The C Protein Folding Library is a minimalistic, high-performance modular library of C functions and data structures for computing folding simulations of proteins on a wide variety of computer hardware.
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Programs to download and work with satellite measurements, calculate solar wind (SW) propagation time and compare data to other satellites. It uses and compares different modern techniques to determine the SW planar structures orientation.
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Use SASSIE to generate and manipulate large numbers of molecular structures and then calculate the SAXS, SANS, and neutron reflectivity profiles from atomistic structures. Use for intrinsically disordered proteins. We need alpha-testers and developers.
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Python API for accessing 4chan image boards. Provides posting, reading, and tripcoding capabilities.
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WebBabel is a python web application using OpenBabel to convert files from one format to another. It runs under Windows, Mac or Linux on your desktop, workstation or laptop. It uses the Jmol (or Marvin) viewer to show the structures being converted.
