Search Results for "clustering" - Page 4
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Showing 153 open source projects for "clustering"
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Maximum Common Genome Alignment (MCGA)
Pipeline for creating core genome alignments for phylogenetic analysis
Maximum Common Genome Alignment (MCGA) Tool MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees. -
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GGI stands for "General Graphics Interface", and it is a project that aims to develop a reliable, stable and fast graphics system that works everywhere. We want to allow any program using GGI to run on any platform requiring at most a recompile.
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Unified Cluster
Run bioinformatic task on supercomputers
The web bases system that allows one user register himself in web interface and run bioinformatic tasks on multiple clusters. -
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PuSSH is Pythonic, Ubiquitous SSH, a Python wrapper/script that runs commands in parallel on clusters/ranges of linux/unix machines via SSH, ideally where SSH is configured to use Kerberos, RSA/DSA keys, or ssh-agent as to avoid password authentication.
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RainforestCluster
Dynamically manage Amazon EC2 clusters
RainforestCluster is an Amazon EC2 python program that manages and load-balances dynamic clusters to allow for maximum workflow flexibility and speed at minimal cost. It enables one to quickly and cheaply create dynamic compute clusters in the cloud, which can then run computational pipelines generically. It is also able to optimize the use of spot instances - idle computers in Amazon's cloud that are available at drastically reduced cost (5x-10x cheaper) - but can be terminated at any... -
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Ganglia Job Monarch
Batch system monitoring and archiving
Job Monarch is an addon to the Ganglia Monitoring System that provides batch job monitoring and archiving plus a graphical overview of clusters and assorted batch systems. Fully supported batch system: Torque, PBS and SLURM. Experimental: LSF, SGE -
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ktree
clustering, machine learning, algorithms
This project has moved to github at http://lmwtree.devries.ninja. -
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avimmir
(audio, video, image) Multimedia Multimodal Information Retrieval
audio classification; speaker segmentation; speaker clustering; speaker recognition; spoken document retrieval; image retrieval; video retrieval; etc. -
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GXP is a parallel/distributed shell, plus a parallel task execution engine that runs your Makefile in parallel on distributed machines. Very easy to install (no need to compile. install it on YOUR machine and use it on ALL machines).
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PBS Cluster Viz is a project to display information useful to admins and users about a computing cluster managed by a PBS-compatible resource manager. Information includes load and job distribution. Interactive as well as static output is available.
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Data Ninja
A document clustering system with search & report generation features
A university project - A document clustering software for an audit client with additional features. The main task of clustering takes documents in a directory as an input and outputs an Excel spreadsheet displaying clusters of documents, with each cluster containing documents that are similar to each other. The search features take search terms as input by the user and a directory with documents as an input and outputs an Excel spreadsheet displaying all documents containing the search term and gives similar documents to these. ... -
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Meresco is both an OAI Data Provider and a Service Provider. SourceForge is only used to host the source control (subversion). Sources: http://sources.meresco.org/ Binaries: http://repository.cq2.org/ Mail: http://groups.google.com/group/meresco
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RPyC, or Remote Python Call, is a transparent and symmetrical python library for remote procedure calls, clustering and distributed-computing.
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CIMHA is aimed to create integrated suite to provision and manage HA clusters in virtual environment. It analyzes kernel/hardware health of cluster nodes by using VESPER(linux kernel prober) and migrates the Resources based on probe signals.
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PyDSH is a remote administration tool, consisting of pydsh and pydcp. Pydsh allows you to run a command on multiple hosts in parallel over RSH, SSH or Telnet, OR manage your SSH public keys. The pydcp command allows copying files to/from multiple hosts.
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Stanford Machine Learning Course
machine learning course programming exercise
...It includes implementations of a variety of fundamental algorithms using Python and MATLAB/Octave. The repository covers a broad set of topics such as linear regression, logistic regression, neural networks, clustering, support vector machines, and recommender systems. Each folder corresponds to a specific algorithm or concept, making it easy for learners to navigate and practice. The exercises serve as practical, hands-on reinforcement of theoretical concepts taught in the course. This collection is valuable for students and practitioners who want to strengthen their skills in machine learning through coding exercises. -
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mlpy
Machine Learning Python
mlpy is a Python module for Machine Learning built on top of NumPy/SciPy and of GSL. mlpy provides high-level functions and classes allowing, with few lines of code, the design of rich workflows for classification, regression, clustering and feature selection. mlpy is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License version 3. mlpy is available both for Python >=2.6 and Python 3.X. -
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Infinispan
High performance distributed in-memory key/value store
Infinispan is an open source, Java based data grid platform. ***IMPORTANT*** Starting with Infinispan 5.0.0.FINAL, Infinispan releases are no longer hosted in Sourceforge. They can now be located in www.jboss.org/infinispan/downloads -
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Flow Investigation using N-Dimensions (FIND) is a program designed for analysis and visualization of Flow Cytometry data. FIND focuses specifically on automated population discovery (clustering) methods. The project targets both users and developers.
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A python daemon to watch a directory for kernel’s inotify events and then execute an rsync command to synchronize two different directories (local or remote). A poor man’s mirroring or an alternative (not so) real data replication mechanism
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A web-based monitor for PBS-based clusters (e.g. OpenPBS and Torque). It provides an overview of node usage, running jobs, and active users. It is built on the pbs-python libraries.
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KestrelHPC is a software developed to make life easier to the people that want to have a Diskless Cluster. This Cluster is Multi-User and it has got many tools to configure your cluster. This software can be installed in a Debian or Ubuntu.
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This is a software tool that automates the process of benchmarking high performance computer clusters by auto analyzing the hardware of the cluster and configuring and compiling specialized benchmarks (HPC Challenge, IOzone, Netperf)
