Showing 2807 open source projects for "research"

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  • 1
    This package is developed to perform stationary 13C metabolic flux analysis for estimation of intracellular flux distribution.
    Downloads: 1 This Week
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  • 2
    Downloads: 7 This Week
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  • 3
    MITK Workbench
    ...Beyond the Workbench application, MITK is a comprehensive C++ framework for medical image computing. It provides a modular foundation for extending the MITK Workbench with custom plugins or developing your own medical imaging applications and research prototypes.
    Downloads: 4 This Week
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  • 4
    BioXTAS RAW

    BioXTAS RAW

    Processing and analysis of Small Angle X-ray Scattering (SAXS) data.

    BioXTAS RAW is a program for analysis of Small-Angle X-ray Scattering (SAXS) data. The software enables: creation of 1D scattering profiles from 2D detector images, standard data operations such as averaging and subtraction, analysis of radius of gyration (Rg) and molecular weight, and advanced analysis using GNOM and DAMMIF as well as electron density reconstructions using DENSS. It also allows easy processing of inline SEC-SAXS data and data deconvolution using the evolving factor analysis...
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    Downloads: 92 This Week
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  • 5

    miRge3

    Comprehensive analysis of small RNA sequencing data

    An update to Python package to perform comprehensive analysis of small RNA sequencing data, including miRNA annotation, A-to-I editing, novel miRNA detection, isomiR analysis, visualization through IGV, processing Unique Molecular Identifieres (UMI), tRF detection and producing interactive graphical output. miRge3.0 is developed in python v3.8 and is a recent update of our previous version miRge2.0. This build includes command line interface (CLI) and cross-platform Graphical User...
    Downloads: 19 This Week
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  • 6
    CiteFlow

    CiteFlow

    Desktop research workspace for PDFs, notes, citations, bibliographies.

    CiteFlow is a focused desktop research workspace for students, researchers, and academic writers who want to manage PDFs, notes, citations, and bibliographies in one place. Create project-based workspaces for essays, articles, reports, literature reviews, and long-form research. Import PDFs, read them inside the app, search within documents, compare files side by side, highlight key passages, and add page-based notes.
    Downloads: 2 This Week
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  • 7
    LabPlot

    LabPlot

    Data Visualization and Analysis

    LabPlot is a FREE, open source and cross-platform Data Visualization and Analysis software accessible to everyone.
    Downloads: 22 This Week
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  • 8
    Auto-CS

    Auto-CS

    Automatic annotation of Cued Speech

    ...It is integrated through the **spin-off** mechanism provided by SPPAS, which allows external code bases to remain separate while still being dynamically discovered and used by the main framework. See <https://auto-cuedspeech.org> for details about the related Research Project. See SPPAS website: <https://sppas.org> Auto-CS API documentation: <https://brigitte-bigi.github.io/auto-cs/>
    Downloads: 1 This Week
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  • 9
    QUAST

    QUAST

    Quality Assessment Tool for Genome Assemblies

    ...The tool also produces web-based reports condensing all information in one easy-to-navigate file. QUAST and its three follow-up papers (MetaQUAST, Icarus, QUAST-LG) papers were published in Bioinformatics; the last paper (WebQUAST) is out in Nucl Acid Research.
    Downloads: 12 This Week
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  • 10

    ERmod

    Approximate solvation free energy calculator

    ERmod (Energy Representation Module) is a program to calculate the solvation free energy based on the energy representation method (J. Chem. Phys. 113, 6070 (2000)). The program allows users to calculate the solvation free energy to arbitrary solvents, including inhomogeneous systems, and can run in cooperation with state-of-art molecular simulation software, such as LAMMPS, GROMACS and/or AMBER.
    Downloads: 8 This Week
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  • 11
    FinGLM

    FinGLM

    Committed to building an open, public welfare

    FinGLM is an open-source financial large language model initiative aimed at advancing artificial intelligence applications within the finance industry. The project focuses on developing domain-specific language models that understand financial terminology, corporate reports, and economic datasets. By combining large language model architectures with financial datasets such as corporate annual reports and structured financial records, FinGLM aims to improve AI performance on tasks that...
    Downloads: 0 This Week
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  • 12
    HomeRobot

    HomeRobot

    Mobile manipulation research tools for roboticists

    HomeRobot is an open source robotics framework developed by Facebook Research (Meta AI) that provides a complete software stack for mobile manipulation in real-world and simulated environments. Designed for low-cost robots such as the Hello Robot Stretch, HomeRobot enables agents to perceive, navigate, and interact with their surroundings through vision and manipulation. The system focuses on Open Vocabulary Mobile Manipulation (OVMM) — a challenging task in which a robot must explore an unknown environment, identify an object by name, locate a suitable receptacle, and place the object appropriately. ...
    Downloads: 0 This Week
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  • 13
    ChemCanvas

    ChemCanvas

    Chemical structure drawing tool

    This is targeted to be the most intuitive opensource 2D chemical drawing tool. You can draw organic chemical structures and reactions very easily and quickly. Available to download for Windows and Linux (AppImage, Flatpak, Snap)
    Downloads: 9 This Week
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  • 14
    ANUGA is a software implementation of a hydrodynamic model which is specifically designed to model wetting and drying processes. ANUGA is a joint development project between Geoscience Australia (GA) and the Australian National University (ANU). ANUGA is now being developed on github at https://github.com/anuga-community/anuga_core For information on ANUGA please go to http://anuga.anu.edu.au The ANUGA project is described on http://en.wikipedia.org/wiki/ANUGA_Hydro
    Downloads: 5 This Week
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  • 15
    RetroScheme- Get Your Retrosynthesis

    RetroScheme- Get Your Retrosynthesis

    - RetroScheme is used for molecule sketching and retrosynthesis

    RetroScheme was specifically designed to help Chemists in knowing potential starting material through retrosynthetic analysis. The App is basically a GUI wrapper for the library Aizynthfinder from Astrazeneca.. - The App is coupled with molecular sketching tool to sketch your compound - This was made to be easy for the user and can be used endlessly to assist in potential new drug synthesis
    Downloads: 4 This Week
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  • 16
    Tellurium

    Tellurium

    Model, simulate, and analyze biochemical systems using one tool.

    Tellurium (te.) is a Python environment supporting Spyder2 IDE and Jupyter Notebook aimed for large-scale systems and synthetic biology simulation. It combines a number of existing libraries, including libSBML, libRoadRunner (including libStruct), libAntimony, and is extensible via tePlugins. In addition other tools kits such as matplotlib and NumPy are used to provide additional analysis and plotting support.
    Downloads: 4 This Week
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  • 17
    SMILI

    SMILI

    Scientific Visualisation Made Easy

    The Simple Medical Imaging Library Interface (SMILI), pronounced 'smilie', is an open-source, light-weight and easy-to-use medical imaging viewer and library for all major operating systems. The main sMILX application features for viewing n-D images, vector images, DICOMs, anonymizing, shape analysis and models/surfaces with easy drag and drop functions. It also features a number of standard processing algorithms for smoothing, thresholding, masking etc. images and models, both with...
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    Downloads: 46 This Week
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  • 18
    KaNaPi

    KaNaPi

    Educational Linux Distribution

    Main goals: * Prepare operating system based on Linux kernel and free software for use at home from scratch by building sources. Binary packages/images are also available. * Each package is installed in separate directory, so you can use different versions of applications and libraries by design. * There is only one user 'kanapi' with root permissions, so you don't have to login, remember passwords, etc. * Simple configuration * Automatic compilation.
    Downloads: 39 This Week
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  • 19
    Libro

    Libro

    An interactive program for statistical analysis of texts

    A cross-platform text analysis program written in Python and Free Pascal/Lazarus which scans a whole text file (in plain text, HTML, EPUB, or ODT formats) and ranks all used words according to frequency, performing a quantitative analysis of the text using Shannon-Weaver information statistic and Zipf power law function. It counts words, sentences, chars, spaces, and syllables. Also computes readability indexes (Gunning-Fog, Coleman-Liau, Automated Readability Index (ARI), SMOG grade,...
    Downloads: 1 This Week
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  • 20
    MahfLoader

    MahfLoader

    No ads ,No login ,Download in HD, 4K, even 8K! ,Fastest download

    🚀 Introducing MahfLoader – Your Ultimate YouTube Video Downloader for Windows! 🎬 ✅ No ads ✅ No login ✅ Download in HD, 4K, even 8K! ✅ Fastest download speed ✅ Clean, easy-to-use interface ✅ Built with yt-dlp + ffmpeg 💻 📥 Download Now: 👉 see on comment box 🔥 Save your favorite videos in one click. Perfect for students, editors, and creators!
    Downloads: 9 This Week
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  • 21
    electronic structure calculations with tight-binding density functional theory
    Downloads: 0 This Week
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  • 22
    AquaTerm is a Mac OS X grahics renderer. It allows command line applications written in ObjC, C, FORTRAN, Lisp, Perl or Python to display vector graphics, text and images using a simple API. Adapters for gnuplot, PGPLOT, and PLplot exists as well.
    Downloads: 6 This Week
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  • 23
    GeigerLog

    GeigerLog

    Python program for Geiger counters and Environmental Sensors

    GeigerLog is a combination of data logger, presenter, and analyzer, and is now released in version 2.1! Based on Python (Version 3), it runs on Linux, Windows, Macs, Raspberry Pi, and other. GeigerLog is WiFi-enabled for servers and clients; it can be monitored by SmartPhone. Initially developed for Geiger counters, it is now a more universal tool, which equally well handles data like temperature, air-pressure, humidity, CO2. Continues to support Geiger counters like GQ Electronic's...
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    Downloads: 55 This Week
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  • 24
    relax

    relax

    Molecular dynamics by NMR data analysis

    The software package 'relax' is designed for the study of molecular dynamics through the analysis of experimental NMR data. Organic molecules, proteins, RNA, DNA, sugars, and other biomolecules are all supported. It supports exponential curve fitting for the calculation of the R1 and R2 relaxation rates, calculation of the NOE, reduced spectral density mapping, the Lipari and Szabo model-free analysis, study of domain motions via the N-state model and frame order dynamics theories using...
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    Downloads: 13 This Week
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  • 25
    XCSoar

    XCSoar

    ... the open-source glide computer

    XCSoar is a tactical glide computer for Android, Linux, macOS, and Windows.
    Downloads: 10 This Week
    Last Update:
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