Search Results for "structural" - Page 2
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Showing 64 open source projects for "structural"
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FEATool Multiphysics - FEA & CFD Toolbox
FEATool Multiphysics is an easy-to-use FEA and CFD Simulation Toolbox
...With a very easy-to-use GUI, anyone is now able to quickly set up and perform large scale dynamical and complex engineering physics simulations, with coupled fluid flow, heat transfer, structural mechanics, chemical transport, and electromagnetics effects, without having to learn complex programming. In addition to built-in CAD and pre/post-processing, automatic mesh generation, and multi-physics solvers, FEATool also seamlessly integrates the state-of-the-art OpenFOAM [1], SU2, and FEniCS CFD and FEA solvers. Moreover, native itegration with MATLAB and Python allows advanced simulation scripts and programmatic use cases such as in AI and machine learning [2]... -
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MuseGAN
An AI for Music Generation
...Instead of generating raw audio, the model operates on piano-roll representations of music, which encode notes as time-pitch matrices for each instrument track. This representation allows the neural network to capture rhythmic patterns, harmonic relationships, and structural dependencies across instruments. The architecture is based on convolutional GAN models that learn temporal musical structure and inter-track relationships from training data. The project was trained using the Lakh Pianoroll Dataset, a large collection of multitrack musical sequences derived from MIDI files. -
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CAMPARI
Software for molecular simulations and trajectory analysis
We are proud to introduce version 5 of CAMPARI. We have added a number of new features, most notably a Python interface for interpreting user-supplied code (with the help of ForPy), a novel trajectory storage standard (with the help of libpqxx/PostgreSQL), and a module for performing transition path theory. Naturally, CAMPARI continues to provide the reference implementation of the ABSINTH force field paradigm and implicit solvation model. CAMPARI is a joint package for performing and... -
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ControlNet
Let us control diffusion models
ControlNet is a neural network architecture designed to add conditional control to text-to-image diffusion models. Rather than training from scratch, ControlNet “locks” the weights of a pre-trained diffusion model and introduces a parallel trainable branch that learns additional conditions—like edges, depth maps, segmentation, human pose, scribbles, or other guidance signals. This allows the system to control where and how the model should focus during generation, enabling users to steer... -
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CausalNex
A Python library that helps data scientists to infer causation
CausalNex is a Python library that uses Bayesian Networks to combine machine learning and domain expertise for causal reasoning. You can use CausalNex to uncover structural relationships in your data, learn complex distributions, and observe the effect of potential interventions. -
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Hyperformer
Hypergraph Transformer for Skeleton-based Action Recognition
...To relax such a restriction, Self-Attention (SA) mechanism has been adopted to make the topology of GCNs adaptive to the input, resulting in the state-of-the-art hybrid models. Concurrently, attempts with plain Transformers have also been made, but they still lag behind state-of-the-art GCN-based methods due to the lack of structural prior. -
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SBEVSL is a collaborative project between Dowling and RIT on the development of a Structural Biology Extensible Visualization Scripting Language, so that users can move freely among various molecular graphics tools, such as rasmol, pymol, raster3d, etc.
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Karate Club
An API Oriented Open-source Python Framework for Unsupervised Learning
Karate Club is an unsupervised machine learning extension library for NetworkX. Karate Club consists of state-of-the-art methods to do unsupervised learning on graph-structured data. To put it simply it is a Swiss Army knife for small-scale graph mining research. First, it provides network embedding techniques at the node and graph level. Second, it includes a variety of overlapping and non-overlapping community detection methods. Implemented methods cover a wide range of network science... -
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DockStream
A Docking Wrapper to Enhance De Novo Molecular Design
...DockStream is integrated with the de novo design platform, REINVENT, allowing one to incorporate docking into the generative process, thus providing the agent with 3D structural information. -
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AliceMind
ALIbaba's Collection of Encoder-decoders from MinD
This repository provides pre-trained encoder-decoder models and its related optimization techniques developed by Alibaba's MinD (Machine IntelligeNce of Damo) Lab. Pre-trained models for natural language understanding (NLU). We extend BERT to a new model, StructBERT, by incorporating language structures into pre-training. Specifically, we pre-train StructBERT with two auxiliary tasks to make the most of the sequential order of words and sentences, which leverage language structures at the... -
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Frontend Regression Validator (FRED)
Visual regression tool used to compare baseline and updated instances
...FRED is responsible for automatic visual regression testing, with the purpose of ensuring that functionality is not broken by comparing a current(baseline) and an updated version of a website. The visual analysis computes the Normalized Mean Squared error and the Structural Similarity Index on the screenshots of the baseline and updated sites, while the visual AI looks at layout and content changes independently by applying image segmentation Machine Learning techniques to recognize high-level text and image visual structures. This reduces the impact of dynamic content yielding false positives. FRED is designed to be scalable. ... -
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2D Structural Analysis
Determine the bending moments, shear forces, axial forces and displace
2D Structural Analysis in Python by Ritchie Vink A collection examples of 2D Finite Element Analysis (FEA) made with Jupyter Notebook Lab - https://jupyter.org/ To install Jupyter - https://jupyter.org/install ===== App is available on Play Store -> https://play.google.com/store/apps/details?id=com.ulm.struct If you want to download a python editor for your android smartphone follow this link -> https://play.google.com/store/apps/details? -
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Python Patterns
A collection of design patterns/idioms in Python
Python-Patterns is a repository collecting implementations of many classical design patterns and idioms, written in Python. It serves as an educational resource: showing how to implement creational, structural, behavioral, testability, and other patterns in a Pythonic style (or sometimes less so), illustrating trade-offs, different styles, and use cases. It’s intended for learners or developers interested in software architecture or design, rather than as a production library. Includes pattern examples for testability, delegation, flyweight, proxy, etc., plus patterns outside the classical set (registry, specification, etc.) ... -
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TI2BioP allows mainly the calculation of topological indices (spectral moments) derived from inferred and artificial 2D structures of DNA, RNA and proteins being possible to carry out a structure-function correlation irrespective of sequence alignments. TI2BioP version 3.0 is a python platform with a graphical interface designed for Windows, Linux and Mac OS.
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FastPhotoStyle
Style transfer, deep learning, feature transform
...The framework is particularly useful in applications such as photo editing, film post-processing, and dataset augmentation where realism is critical. By preserving structural details and avoiding distortions, it produces results that are visually consistent with natural images. -
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node2vec
Learn continuous vector embeddings for nodes in a graph using biased R
...The algorithm is designed to learn continuous vector representations of nodes in a graph by simulating biased random walks and applying skip-gram models from natural language processing. These embeddings capture community structure as well as structural equivalence, enabling machine learning on graphs for tasks such as classification, clustering, and link prediction. The repository contains reference code accompanying the research paper node2vec: Scalable Feature Learning for Networks (KDD 2016). It allows researchers and practitioners to apply node2vec to various graph datasets and evaluate embedding quality on downstream tasks. ... -
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PBSuite
Software for Long-Read Sequencing Data from PacBio
...PBJelly fills or reduces as many captured gaps as possible to produce upgraded draft genomes. ----- PBHoney ----- Read The Paper http://www.biomedcentral.com/1471-2105/15/180/abstract PBHoney is an implementation of two variant-identification approaches designed to exploit the high mappability of long reads (i.e., greater than 10,000 bp). PBHoney considers both intra-read discordance and soft-clipped tails of long reads to identify structural variants. -
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Biskit is a python library for structural bioinformatics research. It simplifies the analysis of macromolecular structures, protein complexes, and molecular dynamics trajectories and offers a platform for the rapid integration of external programs. PLEASE NOTE: The Biskit source code as well as any later releases are now hosted on https://github.com/graik/biskit The sourceforge repo is only kept here for reference.
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Hydroponic Automation Platform (HAPI)
Technologies for automating food production on various scales
The Hydroponic Automation Platform Initiative (HAPI) develops and provides hardware and software components for automating food production using hydroponic, aquaponics, and precision agriculture techniques. High-yield production in urban settings is one of the primary goals. Artifacts include hardware design (mainly Arduino-based), firmware, management software and reporting modules. -
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Open Delays
A program that gather trains delays data
...Delays are published by train companies, but only the current day is available. Open Delays intends to gather this data in the longer term, so users can have a statistical vision on the train they use, and control and identify structural problems in train exploitation. This also allows to know for example if the train you are stepping in had 15mn delay in 30% of the cases : if you have this kind of information, you know you will have probably a delay. -
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xPyder PyMOL Plugin
Analyze and visualize coupled residues and their networks in proteins
...PSN), and more, to produce highly customizable publication-quality images. xPyder identifies networks (using concepts from graph theory, such as hubs and shortest path searching), compares matrices and focuses the analysis on relevant information by filtering the data using a modular, user-expandable plugin system that takes advantage of structural and dynamical information, contributing to bridge the gap between dynamical and mechanical properties at the molecular level. -
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SPADE
A toolkit for developing and deploying protein structure algorithms.
The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE. -
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ScrumPy - Metabolic Modelling In Python
Comprehensive and extensible metabolic modelling tool
This SF project still under development. Use http://mudshark.brookes.ac.uk/ScrumPy while this message remains Comprehensive and extensible metabolic modelling tool. Kinetic and Structural modelling in a python environment. Includes MCA, Null-space, Elementary modes, FBA, a modelling oriented interface to MetaCyc, plotting and more. -
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A functional-structural model of tree growth based on carbon partitioning among individual organs that compete for resources.
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Chemical Reaction
Balance chemical reaction and compute material balance
This Python program is used to balance a chemical reaction and to compute the material balance. Furthermore, it's able to check molecules and to write the condensed strutural formula from the name of an organic molecule. (Those both functionalities are still limited.)
