Search Results for "structural"

...This architecture allows richer semantic interpretation, enabling use cases such as scene decomposition, object-level editing, layered captioning, and more fine-grained multimodal reasoning than with flat image encodings alone. By combining text and structured image representations, it aims to facilitate tasks where both descriptive and structural understanding are important, such as detailed image QA, interactive image editing via prompt layers, and image-conditioned generation with structural control. The layered approach supports training signals that help the model learn how visual elements relate to each other and to textual context, rather than simply learning global image embeddings.

...This repository provides the complete inference pipeline for running AlphaFold 3, though access to the model parameters is restricted and must be obtained directly from Google under specific terms of use. The system is designed for scientific research applications in structural biology, biochemistry, and bioinformatics, enabling accurate modeling of proteins, ligands, and covalent modifications. Users can perform local predictions via Docker containers, integrating AlphaFold 3’s inference process with provided JSON input configurations. The software includes flexible options for running both data preprocessing and GPU-accelerated inference, allowing users to adapt to available computational resources.

...We also want to make the combination of graph based modules and tensor based modules (PyTorch or MXNet) as smooth as possible. DGL provides a powerful graph object that can reside on either CPU or GPU. It bundles structural data as well as features for a better control. We provide a variety of functions for computing with graph objects including efficient and customizable message passing primitives for Graph Neural Networks.

Protenix is an open-source, trainable PyTorch reimplementation of AlphaFold 3, developed by ByteDance with the goal of democratizing high-accuracy protein structure prediction for computational biology and drug-discovery research. Protenix provides a complete pipeline for turning protein sequences (with optional MSA / sequence alignment) or structural inputs (e.g. PDB/CIF) into full 3D atomic-level structure predictions. It supports both “full” models and lightweight variants such as “Protenix-Mini,” offering a trade-off between speed/compute cost and predictive accuracy — making structure prediction accessible even in resource-constrained environments. The project also includes support for constraints (e.g., specifying residue- or atom-level contact constraints, or pocket constraints) to guide predictions toward biologically or experimentally relevant conformations, which enhances its utility for tasks like modeling complexes, ligands, or antibody–antigen interactions.

ControlNet is a neural network architecture designed to add conditional control to text-to-image diffusion models. Rather than training from scratch, ControlNet “locks” the weights of a pre-trained diffusion model and introduces a parallel trainable branch that learns additional conditions—like edges, depth maps, segmentation, human pose, scribbles, or other guidance signals. This allows the system to control where and how the model should focus during generation, enabling users to steer...

CausalNex is a Python library that uses Bayesian Networks to combine machine learning and domain expertise for causal reasoning. You can use CausalNex to uncover structural relationships in your data, learn complex distributions, and observe the effect of potential interventions.

...To relax such a restriction, Self-Attention (SA) mechanism has been adopted to make the topology of GCNs adaptive to the input, resulting in the state-of-the-art hybrid models. Concurrently, attempts with plain Transformers have also been made, but they still lag behind state-of-the-art GCN-based methods due to the lack of structural prior.

Karate Club is an unsupervised machine learning extension library for NetworkX. Karate Club consists of state-of-the-art methods to do unsupervised learning on graph-structured data. To put it simply it is a Swiss Army knife for small-scale graph mining research. First, it provides network embedding techniques at the node and graph level. Second, it includes a variety of overlapping and non-overlapping community detection methods. Implemented methods cover a wide range of network science...

This repository provides pre-trained encoder-decoder models and its related optimization techniques developed by Alibaba's MinD (Machine IntelligeNce of Damo) Lab. Pre-trained models for natural language understanding (NLU). We extend BERT to a new model, StructBERT, by incorporating language structures into pre-training. Specifically, we pre-train StructBERT with two auxiliary tasks to make the most of the sequential order of words and sentences, which leverage language structures at the...

The Hydroponic Automation Platform Initiative (HAPI) develops and provides hardware and software components for automating food production using hydroponic, aquaponics, and precision agriculture techniques. High-yield production in urban settings is one of the primary goals. Artifacts include hardware design (mainly Arduino-based), firmware, management software and reporting modules.

pySTEP or Python Strongly Typed gEnetic Programming: A light Genetic Programming API that allows the user to easily evolve populations of trees with precise grammatical and structural constraints.