Search Results for "linux data recovery tool" - Page 16
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Showing 549 open source projects for "linux data recovery tool"
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MethyMer
Design of specific primer combinations for bisulfite sequencing
MethyMer is a Python-based tool aimed at selecting specific primers for amplification of complete CpG islands. These regions are difficult in terms of selection appropriate primers because of their low-complexity, polyN-, CG-richness, etc. MethyMer have a flexible scoring system capable of selecting primers in problematic regions (e.g. SpG islands) and includes specificity test (based on bowtie alignment against bisulfite-treated genome). It also incorporates TCGA CpG methylation... -
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mcc
Magic (the Gathering) Card Collection
Magic (the Gathering) Card Collection is online card database, card search and deck builder tool is well as card collection organizer. It contains data that is Copyright © Wizards of the Coast - All Rights Reserved. -
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Needle
The iOS Security Testing Framework
Needle is an open-source, modular framework to streamline the process of conducting security assessments of iOS apps. Needle was originally made to work with iOS 9 and iOS 10. Since then, Frida was released and become the defacto tool to use with mobile security assessments. Some common Frida mobile security scripts were later implemented within Needle, as some of these scripts worked better or addressed some issues that were present in Needle's custom tooling. Assessing the security of an... -
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SSL Logger
Decrypts and logs a process's SSL traffic
ssl_logger is a Python-based tool that decrypts and logs a target process’s SSL/TLS traffic on Linux and macOS. It attaches to a running process by name or PID and hooks SSL_read and SSL_write calls to capture plaintext data flowing through encrypted connections. Output can be streamed to the console with verbose metadata or written to a PCAP file for later analysis in standard tooling. -
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Amon
Amon is a modern server monitoring platform
Amon is a monitoring tool that provides real-time insights into server performance, application logs, and system metrics. -
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PBSuite
Software for Long-Read Sequencing Data from PacBio
This currently hosts two projects created and maintained by Adam English. PBJelly - the genome upgrading tool. PBHoney - the structural variation discovery tool Both are contained within the PBSuite code found in downloads. ----- PBJelly ----- Read The Paper http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0047768 PBJelly is a highly automated pipeline that aligns long sequencing reads (such as PacBio RS reads or long 454 reads in fasta format) to... -
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Gene-Environment iNteraction Simulator 2
A tool able to simulate gene-environment and gene-gene interactions.
Gene-Environment iNteraction Simulator 2 (GENS2) simulates interactions among two genetic and one environmental factor and also allows for epistatic interactions. GENS2 is based on data with realistic patterns of linkage disequilibrium, and imposes no limitations either on the number of individuals to be simulated or on number of non-predisposing genetic/environmental factors to be considered. The GENS2 tool is able to simulate gene-environment and gene-gene interactions. To make the... -
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PyGlossary
A tool for converting dictionary data files aka glossaries
The SourceForge page is not updated anymore Please use: https://github.com/ilius/pyglossary -
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Inferact
File-tagging tool coded in Python.
Tag, search (e.g., by similarity), manage data collections of your choosing. Currently optimized for music and image data. Uses sha1 hashes for identification. Please use additional programs such as: IrfanView (http://www.irfanview.com) and MPC (https://mpc-hc.org) for media handling and a console with unicode support, like ConEmu (https://conemu.github.io). -
Secure File Transfer for Windows with Cerberus by RedwoodCerberus supports unlimited users and connections on a single IP, with built-in encryption, 2FA, and a browser-based web client — all deployable in under 15 minutes with a 25-day free trial.
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dpanalyzer
postprocessing tool for Project Gutenberg Distributed Proofreaders
Specialized tool for PostProcessors of books produced by Project Gutenberg Distributed Proofreaders. Parses the markup structure of a project file out of the formatting rounds; reports about the text structure found, and identifies markup errors. Planned future features: generation of normalized dp output by rejoining split paragraphs and moving around footnotes, renumbering of pages; conversion to basic LaTeX and basic HTML markup for further processing. -
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colorview2d
Extendible 2D color plotting tool.
Visualize and analyze 3D data files using 2D colorplots. Inspired by spyview. Written in python. -
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Leave A Trace Tools
Tools for reading the track data of the project "Leave a Trace"
The art project "Leave a Trace" (LAT) records an displays people movement in real time. It is installed as a permanent exhibition within the Charité in Berlin, Germany. Please find more Details about LAT here: https://leave-a-trace.charite.de/action This sourceforge project provides python tools to read the raw XML data produced by LAT. The data reading module works with python2 and python3. LAT XML Data can be downloaded... -
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opendmp
An Open-source implementation of the ndmpv4 protocol
Opendmp is an implementation of the NDMP v4 protocol written in python. -
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forest01
Automatic delineation of forest borderlines
Forest01 is a tool for the automatic mapping of forest based on Airborne Laser Scanner data. The forest mapping is performed by means of quantitative criteria typical of forest definitions, namely minimum threshold for the height of trees, canopy cover, forest area size and width. -
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Cloud Export is a tool to automatically extract your data from web applications and save it to your local file system for backup purposes, but more extensive than Google Takeout. Plans are based on http://www.dataliberation.org.
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Copy Number Analysis for Targeted Resequencing (CONTRA) is a tool for copy number variation (CNV) detection for targeted resequencing data such as those from whole-exome capture data.
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SAT-Assembler
Scalable and accurate targeted gene assembly for large-scale NGS data
SAT-Assembler is a scalable and accurate gene assembly tool for large-scale RNA-Seq and metagenomic data. It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms. -
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Generic directory service (for the EPICS tool set). Directory entries are channels with properties and tags. Applications can query a web service to retrieve channels based on wildcard matching on properties and tags, and manipulate the directory data. Code has been moved to GitHub at https://github.com/ChannelFinder
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in... -
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nogotofail
An on-path blackbox network traffic security testing tool
nogotofail is a network security testing tool developed by Google to help developers and researchers identify weaknesses in TLS/SSL implementations and detect unencrypted traffic that could compromise sensitive data. The tool functions as an on-path man-in-the-middle (MiTM) testing system, allowing users to inspect and evaluate how applications and devices handle encrypted connections under real-world conditions. It can detect a wide range of vulnerabilities, including improper SSL... -
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NoSQLMap
Automated NoSQL database enumeration and web application exploitation
A security tool for detecting and exploiting vulnerabilities in NoSQL databases, similar to SQLMap for traditional databases. -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic,... -
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RAMBO-K
Read Assignment Method Based On K-mers
RAMBO-K is a tool for rapid and sensitive removal of background sequences from Next Generation Sequencing data. Please cite our publication (http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0137896) if you use RAMBO-K. We moved to GitLab, please visit our homepage for latest development. The latest stable versions of RAMBO-K will still be provided here. -
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Debox GNU/Linux Live CD
Debox Linux is a live distro based on Debian distribution and Openbox
Debox GNU/Linux Live CD is a live hybrid distribution based on Debian and OpenBox. Can be used on computers supporting 32-bit (x86) or 64-bit (x86_64) instruction set architectures. Debox was made with the middle and novice user in mind. Includes a wide range of software: word processor, media players, internet browser, email client, disk utilities, java and few games. Also, a plenty of printers, scanners, bluethooth, web cams, digital tv, fax are supported by default. Different...