Search Results for "common" - Page 16
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Showing 577 open source projects for "common"
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MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Stingray - Schema-Based File Reader
Simple handling of numerous data file formats, even COBOL EBCDIC.
Stingray contains a number of components for reading spreadsheets and other flat files. It copes with COBOL files (in EBCDIC) and even COBOL Copybook (or DDE) definitions. Simple Python programs can handle a wide variety of files. This is the Python3.3 release. -
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EESST
Email Exchange of Secondary School Transcripts
This package implements a common format for exchanging secondary school academic transcripts via electronic mail. MIME and OpenPGP email standards are applied to enable secure communication of transcripts directly from each student to his or her chosen recipients without intervention or monitoring by any third-parties. Thus, using the defined format better protects student privacy and independence than does current practice. -
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NoSQLMap
Automated NoSQL database enumeration and web application exploitation
A security tool for detecting and exploiting vulnerabilities in NoSQL databases, similar to SQLMap for traditional databases. -
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BeleniX is an OpenSolaris Distribution with an installable Live CD. It includes all the features of OpenSolaris and adds a whole variety of open source packages. BeleniX is free to use, modify and distribute.
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PyLogAnalyser
A Python multiplatform tool to filter, colorise and analyse logs
...These rules permit to detect an input line according to a regular expression (regex) or line number range, filter it, pass it, colorise in foreground and background, columnise the groups of the regex and enable or disable the rule. The final goal of this tool is to ameliorate reading long and difficult b/w logs, speed up the analysis and enhance day to day wearying activities. As common application, you can colorise adb logcat logs taking the example files and using them (and also, filter unnecessary lines). You can INSTALL it from PyPI: $ python -m pip install pyloganalyser -
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ElastAlert
Easy and flexible alerting with ElasticSearch
...When a match occurs, it is given to one or more alerts, which take action based on the match. This is configured by a set of rules, each of which defines a query, a rule type, and a set of alerts. Several rule types with common monitoring paradigms are included with ElastAlert. Alerts link to Kibana dashboards. Aggregate counts for arbitrary fields. Combine alerts into periodic reports. Separate alerts by using a unique key field. Intercept and enhance match data. Additional rule types and alerts can be easily imported or written. -
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Django Extra Views
Django's class-based generic views are awesome
Django's class-based generic views are awesome, let's have more of them. Django-extra-views is a Django package that introduces additional class-based views in order to simplify common design patterns such as those found in the Django admin interface. Supported Python and Django versions: Python 3.5+, Django 2.1–3.2, see tox.ini for an up-to-date list. Add support for pagination in ModelFormSetView and its derivatives, the goal being to be able to mimic the change_list view in Django's admin. Currently, this is proving difficult because of how Django's MultipleObjectMixin handles pagination. -
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pycrc
CRC C source generator
pycrc is an easy to use CRC (cyclic redundancy check) calculator and C source code generator. The generated source code can be optimized for simplicity, speed or space. pycrc contains a long parameter list of common CRC models. The program is self contained and does not require installation. Apart from a python installation, it does not require other libraries to be installed. -
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rpmlint
Tool for checking common errors in rpm packages
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Maximum Common Genome Alignment (MCGA)
Pipeline for creating core genome alignments for phylogenetic analysis
Maximum Common Genome Alignment (MCGA) Tool MCGA is a bioinformatics analysis tool written in Python for generating core genome alignment for bacterial whole genome sequences which can be used to construct phylogenetic trees. -
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Smart-grid Common Research Emulator (SCORE) captures the behavior and interactions of power networks and communication networks and emulates Smart Grid applications in an integrated and scalable environment. The researchers can verify the correctness of their new Smart Grid applications on a few devices and then use SCORE for large scale evaluation and performance prediction studies.Also, they can use SCORE to evaluate and validate the design and performance of their Smart Grid applications before large-scale deployment.
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Python Open Source Echosounder Toolkit
real-time visualization of network data broadcasts from echosounders
During acoustic surveys of marine ecosystems, fisheries scientists need to quickly interpret large amounts of echosounder data and decide whether and where to sample for targeted organisms. The Python Open Source Echosounder Toolkit (pyOSET) was designed to facilitate this process by providing near real-time visualization of network data broadcasts from multiple echosounder systems, and to serve as a framework for implementation of algorithms to detect, locate, and identify fish or the... -
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CorEngine is a work in progress, OpenGL graphics powered 3D game engine designed to help independent game developers with quick prototyping and game/virtual environment creation. The engine supports a standard set of features, like skeletal animation, post processing, Lua/C programming, physics powered by Bullet Physics, GUI and 2D/3D Audio.
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MITRE Common Layer 3
Approach to choose MANET routing peers for existing protocols.
...This software is a prototype of the Common Layer 3 interface for two different mobility patterns on a mobile network using OLSR for MANET routing and OSPFv2 for IP routing. Draft RFC describing this interface in detail may be found at https://datatracker.ietf.org/doc/draft-shaio-manet-common-l3-interface/. -
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
...The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at http://git.durrantlab.com/jdurrant/binana . Versions on SourceForge are not up to date. -
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pipasic
pipasic: Protein Abundance Correction in Metaproteomic Data
...pipasic (peptide intensity-weighted proteome abundance similarity correction) is a tool which corrects identification and spectral counting based quantification results using peptide similarity estimation and expression level weighting within a non-negative lasso framework. pipasic has distinct advantages over approaches only regarding unique peptides or aggregating results to the lowest common ancestor. -
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fitGCP
Fitting genome coverage distributions with mixture models
...fitGCP is a framework for fitting mixtures of probability distributions to genome coverage profiles. Besides commonly used distributions, fitGCP uses distributions tailored to account for common artifacts. The mixture models are iteratively fitted based on the Expectation-Maximization algorithm. Please find the accompanying paper here: http://dx.doi.org/10.1093/bioinformatics/btt147 -
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This project provides a Fortran90 library and a python module for singular spectrum analyses such as PCA/EOF or MSSA. It is intended for people interested, for example, in analysing climate or financial variability.
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CCH
A genetics tool that identifies genomic regions of shared ancestry
Combinatorial Conflicting Homozygosity (CCH) uses dense Single Nucleotide Polymorphism (SNP) genotypes to identify regions of the genome inherited from a common ancestor among any or all subsets of a group. Analysis is rapid and can identify loci containing genes for dominant traits. CCH is robust to the presence of phenocopies and can detect undisclosed shared common ancestry. The associated publication regarding CCH may be accessed here: http://www.biomedcentral.com/1471-2164/16/163 If you use CCH please cite: Levine AP, Connor TM, Oygar DD, Neild GH, Segal AW, Maxwell PH, Gale DP. ... -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade-defining polymorphism. This functionality has been implemented using the tabix tool on the server side, providing simple and rapid access to the information at each tree node, including informative SNPs stored in VCF-similar files. ... -
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RenApp
The File Renamer App
This Program renames files of specified extension in a specified directory with a common name and appended numbering This Program also removes backup files from Specified directories and sub-directories. -
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CIOS Audio Core
A cross platform audio inteface
CIOS Audio Core is the infrastructure and subsystem in Collective Intelligence Operation System. It is a cross platforms audio abstract interface, supports including Mac OS X, Linux, Android, iPhone OS and Windows 7. -
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Ymap - Yeast Mapping Analysis Pipeline
Pipeline for large-scale genome changes analysis of genome datasets.
...To facilitate analysis of copy number variations (CNV), single nucleotide polymorphisms (SNPs), and loss of heterozygosity (LOH) events in Candida albicans, the most common human fungal pathogen, we developed a pipeline for analyzing diverse genome-scale datasets from microarray, deep sequencing, and restriction site associated DNA sequence experiments for clinical and laboratory strains. The YMAP pipeline automatically illustrates genome-wide information in a single intuitive figure and is readily modified for the analysis of other categories of data and other pathogen species with small genomes. -
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miRStat
identification of common sets of microRNAs for groups of genes
miRStat enables identification of regulatory microRNA targeting several genes in a custom gene group. This Python application is based on the TargetScan 6.2 microRNA target prediction data. Conserved and Nonconserved site context+ scores files are required (unzip and place to directory with program). Available at http://targetscan.org/cgi-bin/targetscan/data_download.cgi?db=vert_61 -
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diCal-IBD
diCal-IBD predicts identical by descent tracts using sequence data
...It provides means for calculating the accuracy of the prediction, if the true tracts are available, plotting of the predicted tracts, their TMRCA (time to the most recent common ancestor) and corresponding posterior probabilities, and identification of putative recent positive selection through investigation of average IBD sharing
