Showing 494 open source projects for "structure"

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  • 1
    Quantum Honeycomp

    Quantum Honeycomp

    Interactive program to calculate electronic properties in graphene

    Calculate electronic properties of graphene-like systems with a user friendly interface. The code uses the tight binding approximation and it is able to stude in a 0D, 1D and 2D geometries, orbital and magnetic fields, intrinsic and extrinsic spin-orbit coupling, sublattice imbalance, and interactions at the mean field level. The most recent version can be found in https://github.com/joselado/quantum-honeycomp Example...
    Downloads: 0 This Week
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  • 2
    Spectral-SpecPro

    Spectral-SpecPro

    Spectral - software for manipulating optical spectroscopy data

    ...Spectral takes files produced by Jasco instruments (uv-vis absorbance, fluorescence, circular dichroism readings as a function of wavelength, temperature, or time) and facilitates basic operations such as unit conversion (CD spectra), conversion into the format taken by CDPro (estimation of secondary structure; CD spectra), scatter correction (absorbance spectra), smoothing, re-sampling of the x-axis, and generic combination (sum, product, average, standard deviation) of multiple curves. Spectral-SpecPro is based on earlier software written by Stephen R Martin (MRC-NIMR London NW7 and Francis Crick Institute London NW1).
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  • 3
    Flasky

    Flasky

    Companion code to my O'Reilly book "Flask Web Development"

    Flasky is a comprehensive example web application built with the Flask microframework that demonstrates best practices for developing real-world Python web applications, covering everything from project structure and configuration to database models, authentication, and deployment. It serves as both a tutorial and sample codebase that walks developers through building a full-featured web application, including user registration and login, role-based permissions, user profiles, and content creation. The project shows how to organize a Flask application into reusable blueprints, configure environment-specific settings, integrate SQL databases via SQLAlchemy, and manage migrations. ...
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  • 4
    Phaistos
    Phaistos is a framework for all-atom Monte Carlo simulations of proteins. It incorporates several advanced probabilistic models of protein structure for conformational sampling, efficient move-algorithms and the OPLS and PROFASI forcefields.
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    SAWS

    SAWS

    A supercharged AWS command line interface (CLI)

    ...SAWS aims to supercharge the AWS CLI with features focusing on improving ease-of-use, and increasing productivity. Under the hood, SAWS is powered by the AWS CLI and supports the same commands and command structure. In addition to the default commands, subcommands, and options the AWS CLI provides, SAWS supports auto-completion of your AWS resources. Currently, bucket names, instance ids, and instance tags are included, with additional support for more resources under development. Sometimes you're not quite sure what specific command/subcommand/option combination you need to use. ...
    Downloads: 1 This Week
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  • 6
    LogicalLogViewer

    LogicalLogViewer

    Parses a log file, shows the relevant information in a table

    Parses a log (file or http), shows the relevant information in the form of a table. Allows filtering, searching, limited keyword highlighting. Is fully customizable: - which information to show - adding alternative parsers - reads from a file or a http server Current alpha version supports multiple parsers, for which the specification is found in an XML file (which should have the extension '.lpc'. The interface is not customizable yet. If you're interested in how it is done, check out the code.
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  • 7

    asyncoro

    Python framework for asynchronous, concurrent, distributed programming

    ...Asynchronous completions implemented in asyncoro are sockets (non-blocking sockets), database cursors, sleep timers and locking primitives. Programs developed with asyncoro have same logic and structure as Python programs with threads, except for a few syntactic changes. asyncoro supports socket I/O notification mechanisms epoll, kqueue, /dev/poll (and poll and select, where necessary), and Windows I/O Completion Ports (IOCP) for high performance and scalability, and SSL for security
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  • 8
    node2vec

    node2vec

    Learn continuous vector embeddings for nodes in a graph using biased R

    ...The algorithm is designed to learn continuous vector representations of nodes in a graph by simulating biased random walks and applying skip-gram models from natural language processing. These embeddings capture community structure as well as structural equivalence, enabling machine learning on graphs for tasks such as classification, clustering, and link prediction. The repository contains reference code accompanying the research paper node2vec: Scalable Feature Learning for Networks (KDD 2016). It allows researchers and practitioners to apply node2vec to various graph datasets and evaluate embedding quality on downstream tasks. ...
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  • 9
    To create an Open Source and Free solution for the analysis of woven fabric stuctures. Included will be the ability to view the weave structure in 2D, 3D and profile as well as print and save the drafts (patterns).
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  • 10
    Algorithms in Python

    Algorithms in Python

    Data Structures and Algorithms in Python

    Algorithms in Python is a collection of algorithm and data structure implementations (primarily in Python) meant to serve as both learning material and reference code for engineers. It includes code for graph algorithms, heap data structures, stacks, queues, and more — each implemented cleanly so learners can trace logic and adapt for their problems. The repository is particularly useful for people preparing for competitive programming, job interviews, or building a foundational understanding of algorithmic patterns. ...
    Downloads: 0 This Week
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  • 11
    GT NLP Class

    GT NLP Class

    Course materials for Georgia Tech CS 4650 and 7650

    This repository contains lecture notes, slides, assignments, and code for a university-level Natural Language Processing course. It spans core NLP topics such as language modeling, sequence tagging, parsing, semantics, and discourse, alongside modern machine learning methods used to solve them. Students work through programming exercises and problem sets that build intuition for both classical algorithms (like HMMs and CRFs) and neural approaches (like word embeddings and sequence models)....
    Downloads: 1 This Week
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  • 12

    dpanalyzer

    postprocessing tool for Project Gutenberg Distributed Proofreaders

    Specialized tool for PostProcessors of books produced by Project Gutenberg Distributed Proofreaders. Parses the markup structure of a project file out of the formatting rounds; reports about the text structure found, and identifies markup errors. Planned future features: generation of normalized dp output by rejoining split paragraphs and moving around footnotes, renumbering of pages; conversion to basic LaTeX and basic HTML markup for further processing.
    Downloads: 0 This Week
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  • 13
    Parse C++ header files using ply.lex to generate navigable class tree representing the class structure. CppHeaderParser.py has the advantage of being a pure python C++ header parser. Grap a copy of ply at http://www.dabeaz.com/ply/
    Downloads: 0 This Week
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  • 14
    mergepbx

    mergepbx

    script for merging XCode project files in git

    ...Simply adding files can lead to merge conflicts that have to be solved manually, although it would be possible to resolve the conflict automatically if the merge algorithm would be aware of the structure of Xcode's project file. After long and annoying merge sessions in one of my projects, I came to the conclusion, that writing a merge driver for git which understands the structure of the project file would be a worthwhile endeavour, as it would save me from solving the merge conflicts for my co-workers. Unfortunately, that script was finished only after the project ended. ...
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  • 15

    GNU Hyperbole: The Everyday Info Manager

    Create hyperlinks just by dragging, find contacts instantly, ...

    GNU Hyperbole (pronounced Ga-new Hi-per-bo-lee), or just Hyperbole, is an amazing programmable hypertextual information management system implemented as a GNU Emacs package. This is the first public release in 2016. Hyperbole has been greatly expanded and modernized for use with the latest Emacs 25 releases; it supports GNU Emacs 24.4 or above. It contains an extensive set of improvements that can greatly boost your day-to-day productivity with Emacs and your ability to manage information...
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  • 16
    This software has moved to http://www.poissonboltzmann.org/
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  • 17
    Python library to perform electronic structure calculations with tight binding models in different types of lattices and different dimensionalities. It allows to include different terms in the Hamiltonian as sublattice, exchange field or magnetic field. Provides functions to calculate different Green functions, band structure, density of states, transport using Landauer formula, topological invariants, etc.
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  • 18

    Py3DN

    Morphometric analysis and visualization of the 3D structure of neurons

    ...The application was developed in Python and uses Blender (an open source program) to produce detailed 3D representations of raw and processed data. Py3DN is described in the paper: Aguiar P et al, "Versatile morphometric analysis and visualization of the three-dimensional structure of neurons", Neuroinformatics, 2013, 11(4):393-403 doi: 10.1007/s12021-013-9188-z
    Downloads: 0 This Week
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  • 19

    inFolder

    A personal wiki created by your directory structure

    A graphical text editor used to maintain a collection of pages, whose content is created by the user, but whose hierarchical structure is dictated by the directory structure.
    Downloads: 0 This Week
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  • 20
    nogotofail

    nogotofail

    An on-path blackbox network traffic security testing tool

    ...The system’s flexible architecture supports automated testing at scale, making it suitable for both single-device assessments and large network evaluations. Its modular structure also allows for customization and extension, enabling researchers to target specific network behaviors or encryption flaws.
    Downloads: 2 This Week
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  • 21
    Stingray - Schema-Based File Reader

    Stingray - Schema-Based File Reader

    Simple handling of numerous data file formats, even COBOL EBCDIC.

    Stingray contains a number of components for reading spreadsheets and other flat files. It copes with COBOL files (in EBCDIC) and even COBOL Copybook (or DDE) definitions. Simple Python programs can handle a wide variety of files. This is the Python3.3 release.
    Downloads: 2 This Week
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  • 22

    LaTeX Helper

    GUI to help create a LaTeX document

    This GUI lets the user navigate a wide selection of LaTeX structure and formatting tags that are used to write a document in LaTeX. It also has a raw text input box with a LaTeX preview for testing out LaTeX markup. Also, each markup has associated help text and is automatically selected to be ready to paste into the user's text editor. Also, this GUI lets the user choose which text editor and supporting programs are used to create their LaTeX document instead of forcing them into a particular interface of a pre-defined IDE.
    Downloads: 0 This Week
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  • 23
    eSBMTools

    eSBMTools

    python tools for enhanced native structure-based modeling

    eSBMTools: python tools that assist the setup and evaluation of native structure-based simulations of proteins and nucleic acids, both at the Cα and all-atom level. The tools interface with GROMACS and support its standard output formats. Information from other sources like bioinformatics or experimental data can be added to the standard native structure-based model (SBM). Publication to be cited: Benjamin Lutz, Claude Sinner, Geertje Heuermann, Abhinav Verma, and Alexander Schug. eSBMTools 1.0: enhanced native structure-based modeling tools. ...
    Downloads: 0 This Week
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  • 24

    NuxSFM (CLOSED)

    A Arch Linux x86_64 distro for Structure From Motion

    Pierre-Yves, August 2016
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  • 25
    superboucle

    superboucle

    Loop based software with jack transport, record and midi controllable

    ...Typical usage : * You need to control jack transport with external midi device and want a button to jump to a specified location in song. * You have some instruments patterns but you have no idea of song structure. * You make live performance with pre-recorded instruments.
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