Search Results for "input" - Page 15
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Showing 506 open source projects for "input"
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PyRate
Bayesian Estimation of Speciation and Extinction from Fossil Data
PyRate is a Python program to estimate speciation, extinction, and preservation rates from fossil occurrence data using a Bayesian framework. The method was described by D Silvestro, J Schnitzler, LH Liow, A Antonelli, and N Salamin in Systematic Biology (http://sysbio.oxfordjournals.org/content/early/2014/02/08/sysbio.syu006.abstract). *Please download the most up-to-date code from the "PyRate code" tab on this page or from: https://github.com/dsilvestro/PyRate * *An updated manual... -
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Python Control Systems Library
Feedback control system analysis and design
The Python Control Systems Library, python-control, is a python module that implements basic operations for analysis and design of feedback control systems. This homepage for this project is at http://python-control.org and the code base in maintained at https://github.com/python-control/python-control. Information on this page is out of date, but left here for posterity. -
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LaTeX Helper
GUI to help create a LaTeX document
This GUI lets the user navigate a wide selection of LaTeX structure and formatting tags that are used to write a document in LaTeX. It also has a raw text input box with a LaTeX preview for testing out LaTeX markup. Also, each markup has associated help text and is automatically selected to be ready to paste into the user's text editor. Also, this GUI lets the user choose which text editor and supporting programs are used to create their LaTeX document instead of forcing them into a particular interface of a pre-defined IDE. -
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This project is based on pygame which has the power to simplify graphical output in some cases. Additionally it includes methods for user input, some collision detection, sound and file access supporting ominous structures. However this project is very limited and has more or less just been an educating experience for myself. Thanks
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superboucle
Loop based software with jack transport, record and midi controllable
SuperBoucle is a loop based software fully controllable with any midi device. SuperBoucle is also synced with jack transport. You can use it on live performance or for composition. SuperBoucle is composed of a matrix of sample controllable with external midi device like pad. SuperBoucle will send back information to midi device (light up led). Sample will always start and stop on a beat or group of beats. You can adjust duration of sample (loop period) in beat and offset in beat. But you... -
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GimpPy uses img maps & an img as the input, output is a report.py file used to generate PDFs, the out files may run solo or chained together to make more complex multi page reports. Input required is a dict with vals for flds you have mapped on your img.
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Unsupervised Random Forest
On-line Unsupervised Random Forest
...CPU load) and categorical (e.g. VM instance type) features. In particular, we use an unsupervised formulation of the Random Forest algorithm to calculate similarities and provide them as input to a clustering algorithm. For the sake of efficiency and meeting the dynamism requirement of autonomic clouds, our methodology consists of two steps: (i) off-line clustering and (ii) on-line prediction. RF+PAM can: Cluster observations (Unsupervised Learning) Calculate the dissimilarity between 2 or more observations (how different two observations are) -
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at http://git.durrantlab.com/jdurrant/binana . Versions on SourceForge are not up to date. -
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subnetcalculator
Basic subnet calculator written in Python.
Based on the IP address and subnet mask input from the user, the following values are calculated: #1. Network address #2. Broadcast address #3. Number of valid hosts #4. Wildcard mask #5. Number of mask bits (CIDR notation) #6. Random IP addresses from the subnet. -
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...I mean memorize... long passages, whether scripture, poems, speeches, songs, or anything you care to remember. You just type the text, and if a word is correct it stays. Input any text file you like.
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting clade-defining polymorphism. This functionality has been implemented using the tabix tool on the server side, providing simple and rapid access to the information at each tree node, including informative SNPs stored in VCF-similar files. ... -
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pythonProp is a collection of Python scripts designed to work with VOACAP, allowing users to create input files using a Graphical User Interface and plot output files.
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MDcons(Molecular Dynamics consensus)
Interpretation of Biomolecular MD simulations
MDcons is a tool to analyze conserved contacts during Molecular Dynamics (MD) simulations of Protein, Rna, Dna & Ligand based complexes. The input is either a Molecular Dynamics trajectory or a set of snapshots. The input can also be a single snapshot. The outputs are (1) map of most/less frequently conserved contacts during MD (2) a list of most/less frequently conserved contacts during MD. -
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FABS
Fluorescence and absorption spectroscopy made easy
FABS is a program designed to run a fluorescence/absorption spectrometer on Windows. The program analyzes spectra and provides graphs and data files. Users may choose to input video files from cell phones or other cameras, still images, or even live streams of video from webcams. FABS can perform any necessary calibration and image preprocessing. Experienced users have a number of more advanced options such as background subtraction, adjustments for nonlinearities in detector response, and graph smoothing. ... -
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LWPR
Locally Weighted Projection Regression (LWPR)
Locally Weighted Projection Regression (LWPR) is a fully incremental, online algorithm for non-linear function approximation in high dimensional spaces, capable of handling redundant and irrelevant input dimensions. At its core, it uses locally linear models, spanned by a small number of univariate regressions in selected directions in input space. A locally weighted variant of Partial Least Squares (PLS) is employed for doing the dimensionality reduction. Please cite: [1] Sethu Vijayakumar, Aaron D'Souza and Stefan Schaal, Incremental Online Learning in High Dimensions, Neural Computation, vol. 17, no. 12, pp. 2602-2634 (2005)... -
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C++, Matlab and Python library for Hidden-state Conditional Random Fields. Implements 3 algorithms: LDCRF, HCRF and CRF. For Windows and Linux, 32- and 64-bits. Optimized for multi-threading. Works with sparse or dense input features.
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simplex with branch and bound
A tool for teaching simplex and branch & bound methods
This is a tool for teaching simplex and branch & bound methods. For simplex method, it comes with several examples including degeneracy and cycling, and allow the user to dictate how to pivot. For branch and bound method, it is desinged to interact with the user to explore all possible branch and bound trees. The user can also load a problem from a text file or simply type in a model directly. The format is very simple and very similar to the LP format, see the packed-in examples. -
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globalsoilmap.net/GSIF AG toolbox
facilitating predictions of parameters using statistical models
streamline the DSM process in ArcGIS/Numpy/GDAL/Python using Sampling, Statistical elaboration, Prediction to allow the application of extended statistical models generated by the CUBIST (TM) or JMP (TM) software to a set of auxiliary input parameters, thereby bypassing the need to i) manually calculate the equations using Raster calculator; ii) use a grid-to-point conversion process prior to applying the prediction model in the statistical software itself and then a point-to-grid conversion process. -
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quichem
Utilities for fast input of chemical formulae and equations.
*** New releases of quichem will only be available on GitHub. *** quichem is a utility written in pure Python allowing for fast input and parsing of chemical formulae and equations. Entering data does not require any modifier keys or keystrokes to be pressed. This SourceForge page provided pre-built Windows binaries of quichem-pyside. **To run quichem on Mac OS X or Linux**, or with the wxPython front-end, please download the source from quichem's GitHub page at: github.com/spamalot/quichem. -
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wiki export tool
A tool for exporting Wikipedia data
A simple tool, created in a French project "CoMeRe", for exporting data from all Wikimedia fundation projects, include Wikipedia. To use this, you need prepare two things: Target dump of Wiki Target page name Then, configure the tool with dump path and input the page name, finally just let's it run, you will get the target page. Duration is dependent on size of the dump, and the number of pages. Take care for using option "talk, other talk...", this is now only for french corpora. -
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DataCopy For SQLServer
Data Copy tool for SQL Server and Oracle
Migrate your data from SQLServer to Oracle without creating single dump file. Input is a SQLServer query file defining dataset you want to copy to Oracle. Target table has to exist for copy to go through. Turbo mode offers 5x copy performance improvement. -
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Hg Diff Latex
Create a diff pdf for a .tex file with inclusion from hg revision
This python file creates a diff pdf file which contains the diff between the current files and a given revision or the last committed version. I takes an input main file and checks the diff for all the files included in the main file. Currently only supports hg repositories, though if there is any request for git, I'll try and add it. -
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File based backup 52
Content Based File level Data Backup in Python
Content Based File level Data Backup in Python. This is a utility to backup your files. It can do full and incremental backups. It will take a directory as input, and will back up the files in that folder and all sub-folders to the backup destination directory. It can compress each file individually while backing-up. Mirrors the source directory structure under the target directory. Creates 1 archive file for each source file. Even if the backup/restore program or backup database is not available or lost, the backup files and structure can still be recovered. ... -
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Importer library to import assets from different common 3D file formats such as Collada, Blend, Obj, X, 3DS, LWO, MD5, MD2, MD3, MDL, MS3D and a lot of other formats. The data is stored in an own in-memory data-format, which can be easily processed. www.open3mod.com/ is a 3D model viewer and exporter based on Assimp that is also Open Source.
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Tiny Python Panadapter
Simple Panadapter for I/Q Audio or RTL_SDR dongle
See article in QST, April, 2014, pp 33-38.
