Search Results for "parallel"
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Showing 50 open source projects for "parallel"
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Grafana: The open and composable observability platformGrafana is the open source analytics & monitoring solution for every database.
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pgBadger
A fast PostgreSQL Log Analyzer
...It parses PostgreSQL logs and generates detailed, visually appealing HTML reports, helping DBAs and developers understand query performance, connection issues, and system bottlenecks. With support for incremental analysis, gzip-compressed logs, and parallel processing, pgBadger is ideal for monitoring and optimizing PostgreSQL database activity in production environments. -
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Ora2Pg
Ora2Pg is a free tool used to migrate an Oracle database
ora2pg is an open-source tool used to migrate Oracle databases to PostgreSQL. It connects to an Oracle database, extracts schema and data, and generates SQL-compatible output for PostgreSQL. It supports complex migration scenarios, including stored procedures, triggers, data types, and performance optimization, making it ideal for enterprises transitioning away from Oracle systems. -
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Monte Carlo eXtreme (MCX)
Physically accurate and validated GPU ray-tracer
MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel. -
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CSI-RCMD
Tools Parallel Remote Commands for Unix
* Welcome - This package send remote commands in the nodes based on SSH communication. * Support: The Support Service is FREE. Do you need support? Open a ticket and I will get back to you as soon as possible. * Professional Services: Do you need any FREE professional services to use? Open a ticket as "FAQ request" and I will get back to you as soon as possible. i.e: subject: [FAQ] connect mysql db * CAUTION - Sending unexpected commands (with or without 'root'... -
Free and Open Source HR SoftwareGive your HR team the tools they need to streamline administrative tasks, support employees, and make informed decisions with the OrangeHRM free and open source HR software.
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Mendel’s Accountant is a biologically realistic, forward-time, parallel, numerical simulation program which models genetic change within a population, as affected by mutation and selection.
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Perl Audio Converter
Linux Audio Converter / Tagger / CD Ripper
...It can also extract audio from the following video extensions: RM, RV, ASF, DivX, MPG, MKV, MPEG, AVI, MOV, OGM, OGV, QT, VCD, SVCD, M4V, NSV, NUV, PSP, SMK, VOB, FLV, WEBM and WMV. Parallel Processing, a CD ripping function with CDDB support, batch conversion, tag preservation for most supported formats, independent tag reading & writing, service menus for KDE Dolphin/Konqueror, Gnome Nautilus script, and action scripts for Nemo/Thunar are also provided. -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other bisulfite treated sequencing) to determine genotypes and methylation levels simultaneously. ... -
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The Software Testing Automation Framework (STAF) is a framework designed to improve the level of reuse and automation in test cases and test environments. The goal of STAF is to provide a complete end-to-end automation solution for testers.
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Handy TCP/IP Server/Client Tools
Various TCP/IP servers, clients and network management tools
IPtools is an all in one package that includes various TCP/IP tools. Server: - FTP - TFTP - Syslog - Web - Remote Command - General UDP server - Multicast server Client utilities: - Multicast client - TFTP client Starting on version 0.2.0, a powerful network connection tools UBridge is added, it can bridge: - VXLAN (newly released) - UDP sessions - NIC card of the PC - Connections to Cisco Router Simulator "GNS3/dynamips" and H3C Router Simulator... -
Desktop and Mobile Device Management SoftwareDesktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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GPFS Monitor Suite
A suite of tools for monitoring GPFS clusters.
The GPFS Monitor Suite was developed at the National Center for Atmospheric Research (NCAR) to assist with the deployment and operation of the GLADE storage envrionment, which utilizes IBM's General Parallel File System (GPFS). The suite uses perl scripts and Ganglia to provide low impact near real time monitoring of a GPFS multi-cluster environment consisting of 4,700+ Linux systems. This is not a standalone package, some assembly on your part is required! -
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aCompute
Aims to enable researcher to tap in to mobile computing capability
This is a software agent based computing program that will enable researchers and other users to tap in computing power of machine available by sharing work load on the fly with zero configuration on network & resources A self organizing agent program that will understand network and its resource. where as the only job left to researcher is to split up jobs in several chunks of programs either parallel or sequential jobs and go issue the job (A visual Modeler or Scripting support need to be yet designed) Software agents will automatically manage the rest or resource management, sharing , cloning of tasks etc. new resources can be added and removed from the system on fly; in layman terms the project will create an agent program that enable sharing & execution of program among all the available resources whether it be desktop, laptop, pda . thereby one can accelerate research to the very extent of resource availability with out bothering about anything... ... -
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The Thot toolkit repository has moved to http://daormar.github.io/thot/ Thot is a toolkit for statistical machine translation. The new Thot toolkit includes fully automatic and interactive machine translation, incremental training of statistical models, parallel estimation, ...
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openSEQ
NGS compute distro proloaded with pipeline analysis software
...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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Pipeline Builder for NGS tools
Scripting tool for automatize and managing complex NGS analysis
Handling with NGS tool configuration files is a real challenge for modern biologists and biotechnologist. To increase productivity, specificity and enhance the data processing, this tool provides a collection of commands already structured, leading the user in building the correct pipeline for the data he has to analyse. Pipeline Builder is a scripting tool for managing complex NGS analysis pipelines. It helps the user in composing NGS tool commands and composing his own analysis... -
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Perl System Test
(PEST)
Perl System Test (PEST) is a test harness, written in Perl, for running processes on a distributed testbed via SSH. Test processes are defined in a simple config file for execution on remote hosts, enabling a tester to run tests in serially or in parallel. Processes are as non-blocking and un-buffered as possible. The harness redirects process output to an individual log for each process and logs process metadata. It captures the return code of each remote process and interprets 0 as pass and everything else as fail, enabling it to run tests written in any language. The harness depends on a standard testbed descriptor to facilitate portability across testbeds. ... -
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Cbench is intended as a relatively straightforward toolbox of tests, benchmarks, applications, utilities, and framework to hold them together with the goal to facilitate scalable testing, benchmarking, and analysis of a Linux parallel compute cluster.
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parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. A patch for the structure (ran.c) is also provided in order to correct the generation of the seed number.
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Various tools for creating annotated parallel corpora including pre-trained tagging and parsing models for various languages, sentence alignment tools and word alignment tools. Uplug also includes a web-based interface for interactive sentence and word alignment and scripts for indexing and querying parallel corpora using the Corpus Work Bench CWB. Download 'uplug-main' first and then add other packages.
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slurp
IO buffering in parallel environments with large files
'slurp' and 'glurp' are related utilites that help with buffering of file input and output (IO) in parallel environments with large files. They read and write files using a much larger buffer than typical system and program defaults. -
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Cleo cluster batch system
Smart extendable batch manager + scheduler for HPC
Cleo is written on perl5 and works on Linux and hopely on most UNIXes. This is the batch system for computational clusters, which supports possibly most parallel envinronments. -
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ALEXA-Seq is a method for using massively parallel paired-end transcriptome sequencing for 'alternative expression analysis'.
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EPSILON is a powerful Open Source wavelet image compressor. The project is aimed on parallel and robust image processing.
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Parallel Secure Shell (pssh) is an ssh wrapper that makes it easy to execute commands on multiple remote systems in parallel. pssh accepts lists of host names, system attributes and exclusions.
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IDEA (Interactive Display for Evolutionary Analyses) augments PAML with a graphical interface, phylogeny reconstruction using PhyML or PHYLIP, convenient and efficient parallel processing and visualizations.
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Parallel Port Control Made Easy - parashell allows control of a PC parallel port (input and output) with simple command line arguments. The simplicity of these programs make it very easy to use in scripts. Control stepper motors, Relays, LEDs, etc...
