Search Results for "java modelling tools"
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Showing 86 open source projects for "java modelling tools"
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HubSpot is an AI-powered customer platform with all the software, integrations, and resources you need to connect your marketing, sales, and customer service. HubSpot's connected platform enables you to grow your business faster by focusing on what matters most: your customers.
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The only software you need to increase cash flow, optimize resource utilization, and take control of your assets and inventory.
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Autopsy® is a digital forensics platform and graphical interface to The Sleuth Kit® and other digital forensics tools. It can be used by law enforcement, military, and corporate examiners to investigate what happened on a computer. You can even use it to recover photos from your camera's memory card.
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WxTools (Weather Data Tools)
This package collects Fine Offset and Oregon Scientific weather data.
WxTools (Weather Data Tool Suite) is a collection of software for collecting and displaying weather data from various weather stations. The software works with the Fine Offset WH290 and similar models (including clones such as the Pro-Signal PSG04173). It also works with the Oregon Scientific WMR180 weather station (and probably similar models such as the WMR88 and WMR100) as well as the older WMR928. Sample weather data is provided. -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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DkIT Bridge Designer
Dundalk Institute of Technology Virtual Bridge Design Competition
The DkIT Bridge Designer will provide you with a realistic introduction to engineering through an authentic, hands-on design experience. This software provides you with the tools to model, test, and optimize a steel highway bridge, based on realistic specifications, constraints, and performance criteria. Supported by Dundalk Insititute of Technology and All-Island Funds, this is a virtual bridge designer that allows kids of all ages learn about engineering and compete with their classmates! -
We design our technology to make workforce management easier. APS offers core HR, payroll, benefits administration, attendance, recruiting, employee onboarding, and more.
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openQRM - Cloud Computing Platform
Legacy Release only. Get latest Edition here: http://www.openqrm.com.
openQRM is a web-based open source datacenter management and hybrid cloud computing platform that integrates flexibly with existing components in enterprise data centers. Legacy Release available on Sourceforge. Please visit http://www.openqrm-enterprise.com/index-2.html for latest 5.3 free Community Release. Includes important security updates, bugfixes and enhancements especially for KVM and Cloud plugin. openQRM abstracts Virtualization and supports the following virtualization... -
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The Elvira project is a suite of tools to perform high-throughput genomic assemblies of repetitive, structured samples such as viruses or targeted regions of larger genomes.
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX... -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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PreprocesssorWizard
WYSIWIG conditional compilation preprocessor for Java etc.
A WYSIWYG Conditional Compilation Preprocessor for Java, Perl, C, C++, Basic, PowerShell, C#, Javascript, and other programming languages. Many C and C++ developers rely heavily on the C preprocessor, and lament the lack of a preprocessor in Java, scripting languages, and other programming languages. The principal objection to a preprocessor is that it makes one's code difficult to read. This is indeed true for the C preprocessor. It is sometimes difficult to determine which lines of code... -
When it comes to cybersecurity, what your clients don’t know can really hurt them. And believe it or not, keep them safe starts with asking questions. With ConnectWise Identify Assessment, get access to risk assessment backed by the NIST Cybersecurity Framework to uncover risks across your client’s entire business, not just their networks. With a clearly defined, easy-to-read risk report in hand, you can start having meaningful security conversations that can get you on the path of keeping your clients protected from every angle. Choose from two assessment levels to cover every client’s need, from the Essentials to cover the basics to our Comprehensive Assessment to dive deeper to uncover additional risks. Our intuitive heat map shows you your client’s overall risk level and priority to address risks based on probability and financial impact. Each report includes remediation recommendations to help you create a revenue-generating action plan.
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SIGAR (System Information Gatherer and Reporter) is a cross-platform, cross-language library and command-line tool for accessing operating system and hardware level information in Java, Perl and .NET.
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are interested... -
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Cress Tool Suite
Cress is a comprehensive toolset for graphical service/workflow design
... and validation. Cress aims to make service design as easy as possible without requiring specialist development knowledge. It simplifies service creation to drawing diagrams, clicking buttons and defining a few tool parameters. All key functions of Cress can be controlled from the Chive diagram editor. Cress is written using portable and widely used languages (Perl and Java). It can be extended by a developer for other kinds of services that can be characterised by activity flows. -
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CleanCode
.NET, PowerShell, SQL, Java, Perl, and Javascript developer libraries
Develop clean code with our .NET components (plus PowerShell, SQL, Java, Perl, and JavaScript components as well!). CleanCode highlights include user controls, a validation engine, a diagnostic system, an XML/HTML pre-processor, and a variety of articles on code design. -
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Open Source Exchange community for Cisco-centric developers and customers to publish, discuss and release their open source tools, scripts and utilities for managing or operating Cisco network equipment
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
... tab links to our pipeline constructer. The second homepage tab links to a xterm session on the client. Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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Debian Unstable/testing alpha.
Pre-Alpha Console distro for high performance Linux computing.
... support * Java compliance * IPv6 full stack with IPsets * Multipath storage * Overclocking tools * Student/Developer scripts. (git pull, builders) * i915 latest support drivers and gallium. * Kernel patching, testing featurettes * Wi-Fi and bluetooth ipv4 support * Latest GCC versions * Qt, Java, Maven, Desktop improvements Notes ==== Basic Console Pre-alpha build Test and rate for improvemen -
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x2fasta
Tools for reformatting common sequence formats into fasta
A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format. -
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P2P for Smartphone - Android Gnutella
Mobile P2P App - Use a P2P App on your Smartphone
This Project shows how to create a mobile smartphone app with a gnutella p2p application. It consits of smartphone java sourcecode, documentation, phex source code, phex proxy and instructions to create a working app. This project once was coded with only 2000€ buget and has given revenue of over 30.000€. Happy hacking the java,perl,php code. Other projects: https://www.artikelschreiber.com/en/ https://www.unaique.net/en/ https://www.unaique.com/ https://www.artikelschreiber.com/marketing... -
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MaLe-PSI-BLAST
Machine Learning tuning of NCBI PSI-BLAST
PSI-BLAST is a powerful tool for capturing homologues. However, after several iterations, the Position Specific Substitution Matrix (PSSM) built by the program may score poorly the query and its homologues. Therefore, PSI-BLAST was tuned with Machine-Learning tools. -
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MassBank System is a mass spectral database system. The system includes a database server, a search engine, web service interfaces and maintenance tools.
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A set of tools used in DSICM UW - Core Network Management Group inside Interdisciplinary Center for Mathematical and Computational Modelling at University of Warsaw - for managing and monitoring network.
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Audited Objects (AO) is a tool for the analysis and optimization of automated software processes such as builds. It supports reuse of previously built objects, generation of prerequisite data, parallelization, etc.
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SOAPstreaming
Hadoop-based Framework for Analyzing Large Scale NGS Data
SOAPstreaming, a flexible hadoop-based framework for systematically analyzing large scale NGS data. SOAPstreaming uses an enhanced Hadoop streaming strategy of MapReduce model to parallelize tools, which offers great scalability and efficiently reduces running time of large NGS datasets. Moreover, it has nice expansion capability to integrate new tools for different analysis needs, which more and more tools will be added in this framework. -
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This project aims to build a suite of Natural Language Processing tools. Modules will include corpus indexing and access tools, a part-of-speech tagger, tokenisers, text classification software, etc.