Search Results for "java modelling tools"
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Showing 86 open source projects for "java modelling tools"
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Autopsy® is a digital forensics platform and graphical interface to The Sleuth Kit® and other digital forensics tools. It can be used by law enforcement, military, and corporate examiners to investigate what happened on a computer. You can even use it to recover photos from your camera's memory card.
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DkIT Bridge Designer
Dundalk Institute of Technology Virtual Bridge Design Competition
The DkIT Bridge Designer will provide you with a realistic introduction to engineering through an authentic, hands-on design experience. This software provides you with the tools to model, test, and optimize a steel highway bridge, based on realistic specifications, constraints, and performance criteria. Supported by Dundalk Insititute of Technology and All-Island Funds, this is a virtual bridge designer that allows kids of all ages learn about engineering and compete with their classmates! -
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The Sashimi project hosts the Trans-Proteomic Pipeline (TPP), a mature suite of tools for mass-spec (MS, MS/MS) based proteomics: statistical validation, quantitation, visualization, and converters from raw MS data to the open mzML/mzXML formats.
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WxTools (Weather Data Tools)
This package collects Fine Offset and Oregon Scientific weather data.
WxTools (Weather Data Tool Suite) is a collection of software for collecting and displaying weather data from various weather stations. The software works with the Fine Offset WH290 and similar models (including clones such as the Pro-Signal PSG04173). It also works with the Oregon Scientific WMR180 weather station (and probably similar models such as the WMR88 and WMR100) as well as the older WMR928. Sample weather data is provided. -
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openQRM - Cloud Computing Platform
Get latest Edition here: http://www.openqrm-enterprise.com.
openQRM is a web-based open source datacenter management and hybrid cloud computing platform that integrates flexibly with existing components in enterprise data centers. Releases available at https://github.com/openQRM/openqrm-community. Please visit http://www.openqrm-enterprise.com for latest 5.3 free Community Release. Includes important security updates, bugfixes and enhancements especially for KVM and Cloud plugin. openQRM abstracts Virtualization and supports the following... -
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The Elvira project is a suite of tools to perform high-throughput genomic assemblies of repetitive, structured samples such as viruses or targeted regions of larger genomes.
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux,... -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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PreprocesssorWizard
WYSIWIG conditional compilation preprocessor for Java etc.
A WYSIWYG Conditional Compilation Preprocessor for Java, Perl, C, C++, Basic, PowerShell, C#, Javascript, and other programming languages. Many C and C++ developers rely heavily on the C preprocessor, and lament the lack of a preprocessor in Java, scripting languages, and other programming languages. The principal objection to a preprocessor is that it makes one's code difficult to read. This is indeed true for the C preprocessor. It is sometimes difficult to determine which lines of... -
Desktop and Mobile Device Management SoftwareDesktop Central is a unified endpoint management (UEM) solution that helps in managing servers, laptops, desktops, smartphones, and tablets from a central location.
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SIGAR (System Information Gatherer and Reporter) is a cross-platform, cross-language library and command-line tool for accessing operating system and hardware level information in Java, Perl and .NET.
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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Cress Tool Suite
Cress is a comprehensive toolset for graphical service/workflow design
Cress (Communication Representation Employing Systematic Specification) allows graphical description of a wide variety of services such as in data communications/telecommunications, but Cress is not limited to this. The approach allows services to be described graphically as (work)flows of activities. Cress diagrams are automatically translated into formal languages for rigorous analysis and verification, and are also automatically translated into implementation languages for deployment... -
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CleanCode
.NET, PowerShell, SQL, Java, Perl, and Javascript developer libraries
Develop clean code with our .NET components (plus PowerShell, SQL, Java, Perl, and JavaScript components as well!). CleanCode highlights include user controls, a validation engine, a diagnostic system, an XML/HTML pre-processor, and a variety of articles on code design. -
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Open Source Exchange community for Cisco-centric developers and customers to publish, discuss and release their open source tools, scripts and utilities for managing or operating Cisco network equipment
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
...Software included (location - name): path - biobambam path - bwa path - bowtie2 path - bowtie path - cufflinks path - bcftools path - tophat path - scalpel path - samtools path - sra-toolkit path - bamtools path - delly path - delly-parallel path - picard-tools path - fastahack path - twoBitToFa ~/prog/java/ - mutect ~/prog/python/ - platypus ~/prog/java/ - gatk -
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Debian Unstable/testing alpha.
Pre-Alpha Console distro for high performance Linux computing.
...Final alpha release features: ======== * Usb image * General debian repos * VM optimizations * Hugepages by default * CGROUPs optimized by default * ALSA * Latest Debugging / Baremetal kernels * Full Haswell and MIC support in test * Full optimized python support * Full optimized perl support * Java compliance * IPv6 full stack with IPsets * Multipath storage * Overclocking tools * Student/Developer scripts. (git pull, builders) * i915 latest support drivers and gallium. * Kernel patching, testing featurettes * Wi-Fi and bluetooth ipv4 support * Latest GCC versions * Qt, Java, Maven, Desktop improvements Notes ==== Basic Console Pre-alpha build Test and rate for improvemen -
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x2fasta
Tools for reformatting common sequence formats into fasta
A collection of tools to transform common biosequence formats (e.g. EMBL, SWISS-PROT, UniProtKB, GenBank and RefSeq) into the fasta sequence format. -
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P2P for Smartphone - Android Gnutella
Mobile P2P App - Use a P2P App on your Smartphone
This Project shows how to create a mobile smartphone app with a gnutella p2p application. It consits of smartphone java sourcecode, documentation, phex source code, phex proxy and instructions to create a working app. This project once was coded with only 2000€ buget and has given revenue of over 30.000€. Happy hacking the java,perl,php code. Other... -
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UA-Parser
A multi-language port of Browserscope's user agent parser
ua-parser is a multi-language library for parsing User-Agent strings into structured data, such as browser, OS, and device information. Originally created for web analytics and user tracking, it supports a wide range of platforms and is available in JavaScript, Python, Java, and other languages. ua-parser is often used in server logs, analytics dashboards, and A/B testing systems to segment traffic. -
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A set of tools used in DSICM UW - Core Network Management Group inside Interdisciplinary Center for Mathematical and Computational Modelling at University of Warsaw - for managing and monitoring network.
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MassBank System is a mass spectral database system. The system includes a database server, a search engine, web service interfaces and maintenance tools.
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Audited Objects (AO) is a tool for the analysis and optimization of automated software processes such as builds. It supports reuse of previously built objects, generation of prerequisite data, parallelization, etc.
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SOAPstreaming
Hadoop-based Framework for Analyzing Large Scale NGS Data
SOAPstreaming, a flexible hadoop-based framework for systematically analyzing large scale NGS data. SOAPstreaming uses an enhanced Hadoop streaming strategy of MapReduce model to parallelize tools, which offers great scalability and efficiently reduces running time of large NGS datasets. Moreover, it has nice expansion capability to integrate new tools for different analysis needs, which more and more tools will be added in this framework. -
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This project aims to build a suite of Natural Language Processing tools. Modules will include corpus indexing and access tools, a part-of-speech tagger, tokenisers, text classification software, etc.
