Search Results for "coding line simulator"
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Showing 14 open source projects for "coding line simulator"
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Classic HWUT
Software Unit Tests (Language Independent Approach)
Automation of Unit and System Tests. Tests can be implemented in any language and on many platforms. The flexible approach enables the inclusion of many types of tests, such as memory leak checks (using valgrind), coding rule checks, complexity checks, etc. Tests are run by a simple call to hwut in a base directory of a project. In particular for C, HWUT supports make file generation using 'sos' and 'sols' modes. Remote control-able function stubs may be generated using the 'stub' mode.... -
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Git-it
Git-it is a (Mac, Win, Linux) desktop app for learning Git and GitHub
Git-it is a desktop (Mac, Windows and Linux) app that teaches you how to use Git and GitHub on the command line. This application contains challenges for learning Git and GitHub, by using real Git and GitHub, not emulators. You'll be learning the awesome (and not so scary) command line and GitHub which means when you finish all of the challenges you'll have real repositories on your GitHub account and green squares on your contribution chart. -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in... -
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BIRAP
Bacterial Intergenic Region Analysis Pipeline
BIRAP (Bacterial Intergenic Region Analysis Pipeline) is an open source, easy to use Perl pipeline that can be used to re-annotate bacterial genomes using experimental data. The tool integrates expression profile derived from RNA-seq and/or proteogenomics, compares it with existing in silico annotation and helps validate annotation, identify novel protein coding regions, putative non-coding RNA as well as help correct er-rors in the existing annotation. The pipeline requires “pileup” output... -
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VIGOR3
Annotation of Viral Genomes
VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID). http://www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf contact: Jeff Hoover 301-540-7858 jefhv@aol.com -
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Braille Alphabet Generator
An automated way to generate all braille characters
This project generates all possible braille characters. The characters are generated as image files. User can fully customize the look and feel of the images including their format type. The characters are language independent (i.e., they are not tied to the language the Braille coding is representing) nor are they tied to any Grade level of Braille system. -
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Pop-seq
Population simulator to solve next generation sequencing questions
Pop-seq is a perl based simulation tool, for generating any kind of mapping population using an user defined recombination landscapes. Combined with the Seq-sim tool you can generate pooled or bar-coded next generation sequencing biased outcomes. This tool were used to solve reappearing question in a experimental design (e. g. of how many plants or sequencing depth is advisable in a back crossed or out crossed scenario ) -
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FusionMiner is a molecular biology program which accepts genomic alignments in BLAST/BLAT tabular output and attempts to find true fusion transcripts. A single command runs the pipeline and generates results.
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Package consists of 3 scripts (Perl+Bash) highly scalable that all RMAN and your site specific parms (backup dir etc) can be supplied through a .ini file. Includes .ppt and video demo, also refer some details here padmavyuha.blogspot.com
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simple-vip provides a simple Virtual IP (VIP)/Floating IP solution that should work well on any Linux/UNIX platform. It does this by being configuration-driven, leaving out any hard-coding for specific platforms.
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Zonal Phylogeny Software (ZPS), given a protein-coding gene, searches for any footprints of recent/short-term positive selection, based on zonal phylogeny and related zone-based statistics.
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OECE is a Cisco IOS interface simulator. Useful for beginner to Cisco's IOS command line interface. Supports basic commands like 'enable', 'configure terminal'. It has FULL support for keyboard shortcuts, command shortcuts, history, errors and more.
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LabScripts
Everson Lab Script Coding
Collection of homebrewed scripts for controlling jobs on our University's SGE cluster. Some of these scripts will make use of hpc-sjm. -
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dannyrip
Automated CD/DVD ripper program
After a catastrophic disk failure, I needed to re-rip several hundred CDs and DVDs. None of the available solutions worked quite the way I wanted them to work, so I decided to spend a little time making a script to remove as much pain as possible from the process. The idea here is to have a system which is comprised of three parts - a ripper daemon, an encoder daemon, and a frontend. I'm planning to use avahi to automate discovery of the backend pieces, udisk to automate discovery of...
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