Search Results for "coding"
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Showing 33 open source projects for "coding"
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AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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pgn4web
javascript chess games viewer for websites, blogs and live broadcasts
pgn4web is a javascript chess games viewer for websites, blogs and live broadcasts. "pgn4web has a clean design, and is easily integrated and configured in wordpress. And yet, below that layer of simplicity, it has enough bells and whistles to allow for more baroque needs and taste. A truly great plugin." GM Tiger Hillarp, using the pgn4web plugin for wordpress on his site chess at the bag of cats, May 2013. "We wanted a live viewer that could work on tablets and mobile phones. pgn4web... -
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EnigmaLike is an Enigma-like encoding tool for text files that encodes word-by-word using a dictionary/code book/encryption reel set-up. EnigmaLike is written using PerlTk and has instructions in PDF format. For Linux.
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Classic HWUT - rename of previous HWUT
Software Unit Tests (Language Independent Approach)
...Tests can be implemented in any language and on many platforms. The flexible approach enables the inclusion of many types of tests, such as memory leak checks (using valgrind), coding rule checks, complexity checks, etc. Tests are run by a simple call to hwut in a base directory of a project. In particular for C, HWUT supports make file generation using 'sos' and 'sols' modes. Remote control-able function stubs may be generated using the 'stub' mode. Test cases can be generated using the 'gen' mode, and state machine walkers by the 'sm_walker' mode. ... -
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HtmlDocument
A perl module to build simple html documents
...When you request the html, the string is enclosed in html head and body sections and returned. This does NOT cover ANY POSSIBLE html tags and is not a replacement for the usage of native html coding itself. The user still need to know about html and can add arbitrary html using the add_html() method. -
Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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JCVI VIGOR
Viral Genome ORF Reader
VIGOR (Viral Genome ORF Reader) is a perl application to predict protein sequences encoded in viral genomes. VIGOR determines the protein coding sequences by sequence similarity searching against curated viral protein databases. Please see the wiki to see list of all supported viruses. This work has been funded in whole or part with federal funds from the National Institute of Allergy and Infectious Diseases, National Institutes of Health, Department of Health and Human Services under contract number HHSN272200900007C. -
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Git-it
Git-it is a (Mac, Win, Linux) desktop app for learning Git and GitHub
...You'll also of course need Git and the first challenge in Git-it helps you get that set up. But if you want to get a head start, go for it! You'll continue to use Git and your text editor throughout your bright social coding future. We recommend installing GitHub Desktop (free) because it installs Git in the most consistent way across supported operating systems (Windows and Mac). -
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Betty
Holberton-style C code checker written in Perl
Betty is a Perl-based coding style checker that enforces the Holberton School coding style (inspired by the Linux kernel style) for C code and documentation. It identifies inconsistencies, style violations, and formatting issues in C source files. You should be aware that by default, some text editors are using spaces instead of tabs. For instance, when you press tab key on emacs, by default, leading spaces will be put, and that will cause Betty to raise a lot of warnings. ... -
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MITP
MITP - conserve & novel miRNA identification & target prediction tool
miRNA is a widely known small non-coding RNA which can mediate gene regulation of most important biological processes in plants and animals. Therefore, identification conserve and novel miRNA and their target genes in model and new sequenced species are inevitable. MITP is designed to identify miRNA easily and faster based on sequence mapping result from any mapping software which producing SAM format output result, blast result (default output result) or blat result (default output result). ... -
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ncPRO-seq
Non-Coding RNA PROfiling from sRNA-seq
ncPRO-seq is a tool for annotation and profiling of ncRNAs from smallRNA sequencing data. It aims to interrogate and perform detailed analysis on small RNAs derived from annotated non-coding regions in miRBase, piRBase, Rfam and repeatMasker, and regions defined by users. The ncPRO pipeline also has a module to identify regions significantly enriched with short reads that can not be classified as known ncRNA families. ############# Docker version : download and run Dockerfile (go in "Files" section) ############# GitHub : https://github.com/jbrayet/ncpro-seq -
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BIRAP
Bacterial Intergenic Region Analysis Pipeline
...The tool integrates expression profile derived from RNA-seq and/or proteogenomics, compares it with existing in silico annotation and helps validate annotation, identify novel protein coding regions, putative non-coding RNA as well as help correct er-rors in the existing annotation. The pipeline requires “pileup” output from SAMtools for RNA-seq data and peptide/ePST locus file (GFF) from the Proteogenomic Mapping tool for prote-ogenomics data along with the genome and existing in silico annotation. When information regarding the locus of promot-ers and terminators in the genome (in .coords format) is pro-vided, the pipeline will also help identify non-coding RNA. -
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TransGeneScan
TransGeneScan is a gene finding tool for metatranscriptomic sequences
...Please find the latest version in Github. TransGeneScan is a gene finding tool for Metatranscriptomic sequences. TransGeneScan incorporates strand-speci c hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan (http://fraggenescan.sourceforge.net/), and can predict a sense transcript containing one or multiple genes (in an operon) or an antisense transcript. -
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FIAP
Fully Integrated Annotation Pipeline
FIAP (Fully Integrated Annotation Pipeline) is a fast bacterial genome multithreading annotation pipeline written in Perl that detects genes coding for proteins, tRNAs, and rRNAs (5S, 16S and 23S). FIAP also allows users to include an infinite number of custom databases. This feature is extremely valuable because it allows users to add a personal “flavor” to the annotation and optimize the process for a specific bacterial genome. FIAP can annotate single and multiple sequences, which allows users to annotate, for example, draft genome contigs or different genomes concatenated in multi-fasta file in a single step. ... -
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VIGOR3
Annotation of Viral Genomes
VIGOR is a tool for annotating coding genes in viral genomes. It was developed by Jeffrey Hoover and Shiliang Wang for The JCVI Genomic Sequencing Center for Infectious Diseases (GSCID). http://www.biomedcentral.com/content/pdf/1471-2105-11-451.pdf contact: Jeff Hoover 301-540-7858 jefhv@aol.com -
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Braille Alphabet Generator
An automated way to generate all braille characters
...User can fully customize the look and feel of the images including their format type. The characters are language independent (i.e., they are not tied to the language the Braille coding is representing) nor are they tied to any Grade level of Braille system. -
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Business intelligence tool to create reports, drill-down into an aggregated data set (database table or view) and define available data points without coding.
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Instant CRUD web front-end, featuring auto-discovery of the data dictionary for an RDBMS source. Provides a basic CRUD web interface in minutes without coding and allows a great deal of flexibility for enhancements. CRUD now, code later.
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Solarized
precision color scheme for multiple applications (terminal, vim, etc.)
...A defining characteristic is its fixed palette: rather than arbitrary theme colors, Solarized prescribes specific values that map consistently to UI roles and syntax groups. This yields readability benefits in long coding sessions and improves legibility across displays with varying calibration. Over time, Solarized influenced countless themes and inspired derivatives, but the original remains popular because of its thoughtful contrast ratios and cohesive aesthetic. Whether you choose light or dark, the design aims for comfort and recognizability rather than flashy saturation. -
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FusionMiner is a molecular biology program which accepts genomic alignments in BLAST/BLAT tabular output and attempts to find true fusion transcripts. A single command runs the pipeline and generates results.
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Package consists of 3 scripts (Perl+Bash) highly scalable that all RMAN and your site specific parms (backup dir etc) can be supplied through a .ini file. Includes .ppt and video demo, also refer some details here padmavyuha.blogspot.com
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simple-vip provides a simple Virtual IP (VIP)/Floating IP solution that should work well on any Linux/UNIX platform. It does this by being configuration-driven, leaving out any hard-coding for specific platforms.
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Maypole is a Perl framework for MVC-oriented web applications. It is designed to minimize coding requirements for creating simple web interfaces to databases, while remaining flexible enough to support enterprise web applications.
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Zonal Phylogeny Software (ZPS), given a protein-coding gene, searches for any footprints of recent/short-term positive selection, based on zonal phylogeny and related zone-based statistics.
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OpenCCAM : - Coding tools for the french CCAM (Classification Commune des Actes Médicaux) - Outils d'aide au codage pour la CCAM
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...You have to write a robot-program in any programminglanguage, which fights against other robots in an simulated arena. A musst see for fans of artificial intelligence and coding.
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This game is an MMORPG in various UNIX scripting languages, with a graphical shell accessed by SSH for the client. It will support Linux, Windows, and MacOS X. It is meant to be immersive and allows in-game coding.
