Search Results for "code analysis"
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Showing 47 open source projects for "code analysis"
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CLOC (Count Lines of Code)
Count lines of code in multiple languages with detailed statistics
cloc (Count Lines of Code) is a command-line tool that analyzes source code and reports the number of lines by language, distinguishing between code, comments, and blank lines. It supports hundreds of programming languages and is highly useful for estimating project size, comparing codebases, or tracking development progress. cloc can analyze entire directories, version control repositories, and even compressed archives. -
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diff-so-fancy
Make your diffs human readable instead of machine readable
diff-so-fancy strives to make your diffs human readable instead of machine readable. This helps improve code quality and helps you spot defects faster. diff-so-fancy is also available from NPM, Nix, brew, and as a package on Arch and Debian Linux. Windows users may need to install MinGW or the Windows subsystem for Linux. By default, the separator for the file header uses Unicode line-drawing characters. If this is causing output errors on your terminal, set this to false to use ASCII... -
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A general purpose source code indexer and cross-referencer that provides web-based browsing of source code with links to the definition and usage of any identifier. Supports multiple languages. Up-to-date information in http://lxr.sourceforge.net **CAUTION!** Releases are now issued on Codeberg due to legal reasons. See https://codeberg.org/ajlittoz/CB_LXRsource/releases
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Ftagshtml
FORTRAN and Fortran 90 HTML browsing with indexes.
Ftagshtml converts fortran code into HTML in order to browse and navigate in the call tree for any routine or abstract fortran 90 interface. Compatible with basic C analysis, mixing with fortran 77 and 90. -
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Source code from the Research Institute for Signals, Systems and Computational Intelligence http://fich.unl.edu.ar/sinc
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CSI-EXPLOREFS
Tools Explore the List of Files based Mount
* Introduction: - The ExploreFS is a tools based Perl code. - The tools was created to make one list of entries inside one filesystem Unix or Windows Volumes. - The list can be used to map the state of usage, inventory, extract ranges of lists based dates, propose a list of duplicate files for analysis or removal. - The options and results can be mapped looking the online help. See "ExploreFS --help" and "ExploreDiff --help" * Support: The Support Service is FREE. ... -
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CSI-Math-Notation-PostfixInfix
Perl Lib Math Notation
* Introduction: - This Module is a Library based Perl code. - The library provide: - Convert INFIX expressions to POSTFIX; - Convert POSTFIX expressions to INFIX and; - Perform POSTFIX context validations. - Context validation can be implemented in item selection routines or data context validation, when it is possible to identify data to be selected or ignored in some data analysis process -
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LP CSIC/UAB Apps and Code
Software and Code from Laboratori de Proteòmica CSIC/UAB
Software, Code and Documents from Laboratori de Proteòmica CSIC/UAB ( LP-CSIC/UAB: http://proteomica.uab.cat ) -
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TA-Lib.git: Technical Analysis Library
Mirror of the TA-Lib project using a Git repository
This project is intended to provide Git access to the code of the original project, TA-Lib, which uses Subversion. It is intended for system integrators wishing to use TA-Lib in their Git-managed project through Git submodules or subtrees. No actual development is being done here; all development happens in the original project. -
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub. 2) In addition to the original NAR paper, please see the following links: Benchmarks: http://www.nature.com/protocolexchange/protocols/2965#/introduction Protocol Exchange Files: http://sourceforge.net/projects/cohcap/files/Protocol_Exchange_Example.zip 3) Custom Annotation Files (including EPIC Array): https://sourceforge.net/projects/cohcap/files/additional_Bioconductor_annotations.zip/download -
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ggplot2-book
ggplot2: elegant graphics for data analysis
The ggplot2-book repository contains the source for ggplot2: Elegant Graphics for Data Analysis, written by Hadley Wickham. The book explains the theory and application of the ggplot2 package in R for data visualization, guiding readers through its layered grammar of graphics approach. It serves as both a practical guide and conceptual reference for building advanced plots and mastering ggplot2. -
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CvsChangelogBuilder is an utility to generate advanced, differential and/or graphical changelogs, for a project hosted on a CVS server (CVS change log). It provides a better output than the 'cvs log' command, and accept a lot of options.
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__Alien Cipher
A bespoke symmetric cipher.
Released under 'Creative Commons v3' license Alien Cipher is an endeavour to build my own symmetric cipher. The primary aim is to simply learn the fundamentals and finer details of cryptography in general and build working examples of my ideas in code. The code is shared here for posterity (future folk) in the guise that it may help others also on the path to cryptography. This code demo uses a 256bit rolling hash table (8x8bytes) at its heart to mix together pre-defined parameters in a way that allows the cipher to produce encoded output that is locked to a key of arbitrary length without padding. ... -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
...CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 17 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
...CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX. Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. CSBB now also has capability to process public data. ... -
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
...CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 16 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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ViralFusionSeq [VFS]
Accurately discover viral integration events and fusion transcripts
...https://hpc.nih.gov/apps/ViralFusionSeq/ ViralFusionSeq (VFS) is a versatile high-throughput sequencing (HTS) tool for discovering viral integration events and reconstruct fusion transcripts at single-base resolution. VFS combines soft-clipping information, read-pair analysis, and targeted de novo assembly to discover and annotate viral-human fusion events. A simple yet effective empirical statistical model is used to evaluate the quality of fusion breakpoints. Minimal user defined parameters are required. Source code with user manual and installation guide of VFS is available at sourceforge's "Files" section. ... -
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Souper
A superoptimizer for LLVM IR
...By leveraging SMT (Satisfiability Modulo Theories) solvers, Souper symbolically analyzes LLVM Intermediate Representation (IR) to synthesize equivalent, more efficient expressions. It identifies peephole optimizations—small instruction-level improvements—that LLVM’s optimizer may overlook, thereby improving compiled code quality. Souper can operate in multiple modes: as a standalone analysis tool that extracts and solves SMT queries from LLVM bitcode, or as an LLVM optimization pass that applies discovered optimizations directly to the IR. It integrates seamlessly with Clang and LLVM tools and supports caching mechanisms (RAM or Redis) to accelerate repeated analyses. ... -
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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Cress Tool Suite
Cress is a comprehensive toolset for graphical service/workflow design
Cress (Communication Representation Employing Systematic Specification) allows graphical description of a wide variety of services such as in data communications/telecommunications, but Cress is not limited to this. The approach allows services to be described graphically as (work)flows of activities. Cress diagrams are automatically translated into formal languages for rigorous analysis and verification, and are also automatically translated into implementation languages for deployment... -
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DVCS-Ripper
Rip web accessible (distributed) version control systems: SVN/GIT/HG
...Investigators and red-teamers use it to demonstrate the risk of deploying .git/ or .svn/ alongside web content, recovering not just code but also secrets committed by mistake. Outputs are normalized into usable repos so diffing, blame, and log analysis work as if you had pulled from the canonical remote. While powerful, it’s intended for legitimate testing and incident response, reinforcing best practices like build-time artifact generation and strict web server access rules. -
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Automalator
State Dependency deconstructor and mapper for C source code.
Flowcharts not telling you what you want to know about some C source code? Try a State Dependency map! Every C source file is an implemention of a state machine. Implicit in the definition of a state machine is a network of dependencies between the states. The Automalator * deconstructs the C code into the core state machine * collates the transactions into the dependency net * generates a diagram-format file with the states and dependencies as the nodes and edges. ... -
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Stat cvs/svn Code Change
stat. cvs,svn code changes and generate html report
It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. -
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It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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IP2Location C library enables the user to find the country, region, city, coordinates, zip code, time zone, ISP, domain name, connection type, area code, weather, MCC, MNC, mobile brand name, elevation and usage type that any IP address or hostname originates from. It has been optimized for speed and memory utilization. Developers can use the API to query all IP2Location™ binary databases for applications written in C or supporting static/dynamic library.
