Search Results for "sql command line" - Page 9
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Showing 1609 open source projects for "sql command line"
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MetaErg
Metagenome Annotation Pipeline
MetaErg is a stand-alone and fully automated metagenome and metaproteome annotation pipeline published at: https://www.frontiersin.org/articles/10.3389/fgene.2019.00999/full. If you are using this pipeline for your work, please cite: Dong X and Strous M (2019) An Integrated Pipeline for Annotation and Visualization of Metagenomic Contigs. Front. Genet. 10:999. doi: 10.3389/fgene.2019.00999 The instructions on configuring and running the MetaErg pipeline is available at GitHub... -
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LMAP_S
Lightweight Multigene Alignment and Phylogeny eStimation
Emanuel Maldonado and Agostinho Antunes (2019) LMAP_S: Lightweight Multigene Alignment and Phylogeny eStimation. BMC Bioinformatics, 20:739. doi: https://doi.org/10.1186/s12859-019-3292-5 -
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SSL Signature Check (SSLSigcheck) is an email filter designed to be run from within procmail. It will examine the signature and certificate of a signed email, and add header information that procmail recipes can use to filter the message.
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Mojo-Weixin
Command-line client framework for Weixin
Mojo-Weixin is a Perl-based, command-line client framework for Weixin (WeChat), built using Mojolicious. It provides an HTTP API interface through plugins to control WeChat accounts programmatically, without requiring a GUI. Built using the Mojolicious web framework for asynchronous handling. Plugin architecture enabling extended functionality and HTTP-based automation. -
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OWASP ModSecurity CRS
OWASP ModSecurity Core Rule Set (CRS) Project
The OWASP ModSecurity Core Rule Set (CRS) is a curated, generic Web Application Firewall rule set that detects and blocks common attack categories across most web apps. It focuses on broad protection—SQL injection, cross-site scripting, local/remote file inclusion, command injection, and protocol violations—without requiring app-specific knowledge. Rules are organized into paranoia levels so operators can tune detection aggressiveness and balance false positives against coverage. An anomaly-scoring model accumulates rule hits per request, enabling nuanced blocking thresholds and easier incident triage. ... -
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MTKBabel is a Perl program to operate the i-Blue 747 GPS data logger. It should work also with other GPS devices based on the MediaTek MTK chipset. It is free software released under the GPL license.
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SSH Interruption Mitigator (SSHIM)
Allow remote ssh commands to survive connection failures
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An iptables based firewall for systems running the Linux 2.4 or later kernel. Very flexible configuration allows the firewall to be used in a wide variety of firewall/gateway/router and VPN environments.
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Bash-Accessible SSH FileSystem (BASSHFS)
SSHFS-like functionality via bash
BASSHFS is similar to the existing SSHFS utility except it is does not require FUSE kernel support. Instead, BASSHFS uses the aliasing and function mechanisms of the bash shell to intercept program invocations and remap those that are supported to its own versions. -
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Safe Harbor Deidentification
Safe Harbor Deidentification for medical documents
Phalanx - Deidentify Safe Harbor Deidentification Mode of Phalanx is an abridged pipeline of NLP annotators culminating in NER annotators which write output of text offsets. It uses the Safe Harbor deidentification method. -
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CvsChangelogBuilder is an utility to generate advanced, differential and/or graphical changelogs, for a project hosted on a CVS server (CVS change log). It provides a better output than the 'cvs log' command, and accept a lot of options.
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XSH is a powerfull command-line XML editing tool/programming language in the manner of Unix shell interpreters and line-oriented text editors like ed which can be used either interactively or for batch-mode XML processing.
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ParseCNV CNV call association software takes CNV calls as input and creates SNP based statistics for CNV occurrence in population study cases and controls then calls CNVRs based on neighboring SNPs of similar significance.
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KohaVB
Koha on Oracle Virtual Box
Koha, an free and open source Integrated Library Management System on Oracle Virtual Box. -
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sympaadmin
Command line utility for administering Sympa mailing lists.
sympaadmin is a command line tool for administrating sympa mailing lists from the terminal, making it suitable for use over SSH, for example. -
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httest is a script based tool for testing and benchmarking web applications, web servers, proxy servers and web browsers. httest can emulate clients and servers in the same test script, very useful for testing proxys.
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The Elvira project is a suite of tools to perform high-throughput genomic assemblies of repetitive, structured samples such as viruses or targeted regions of larger genomes.
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SmGen
Verilog Finite State Machine (FSM) Code Generator
SmGen is a finite state machine (FSM) generator for Verilog. On the other hand, it is not an FSM entry tool. The input is behavioral Verilog with clock boundaries specifically set by the designer. SmGen unrolls this behavioral code and generates an FSM from it in synthesizable Verilog. Clock boundaries are explicitly provided by the designer so there is good control on the expected timing -
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Pangea
Pangea: The Pan-Genome Analysis Pipeline
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selectseq
Get specific sequences from a FASTA or FASTQ file.
A command-line utility to manipulate biological sequences from a FASTA or FASTQ file. It can, given a list of identifiers, get only a subset of the sequences (or their complement, i.e., sequences NOT in the list). Can also get sequence number N only. Compressed sequences files are supported if readable by zcat. -
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Teeworlds Add Maps Utility
Creates a config file with voting links for all your maps
Creates a config file with voting links for all the maps in your maps folder. Players will be able to vote to play all the maps you have. -
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virtualcontrol is a configuration and monitoring tool for QEMU/KVM instances on a linux box. virtualcontrol primarily uses the KVM command line tools to do its job. Apart from trivial functions like starting and stopping virtual machines, virtualcontrol also allows freezing/thawing virtual machines (snapshot including memory dump), KVM machine migration and advanced storage functions like HA and dedicated storage solutions (OpenSANd).
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The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
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Git-it
Git-it is a (Mac, Win, Linux) desktop app for learning Git and GitHub
Git-it is a desktop (Mac, Windows and Linux) app that teaches you how to use Git and GitHub on the command line. This application contains challenges for learning Git and GitHub, by using real Git and GitHub, not emulators. You'll be learning the awesome (and not so scary) command line and GitHub which means when you finish all of the challenges you'll have real repositories on your GitHub account and green squares on your contribution chart.
