Search Results for "using" - Page 7
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Showing 810 open source projects for "using"
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Outgrown Windows Task Scheduler?Windows Task Scheduler wasn't built for complex, cross-platform automation. Get a free diagnostic that shows exactly where things are failing and provides remediation recommendations. Interactive HTML report delivered in minutes.
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Atera all-in-one platform IT management software with AI agentsAtera’s AI agents don’t just assist, they act. From detection to resolution, they handle incidents and requests instantly, taking your IT management from automated to autonomous.
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mPUMA
microbial Profiling Using Metagenomic Assembly
mPUMA: microbial Profiling Using Metagenomic Assembly This is a software package which was designed to allow researchers to profile microbial communities using a de novo assembly approach to form Operational Taxonomic Units (OTUs). While originally designed to support the analysis of cpn60 based amplicons, mPUMA can be used to analyze data from any suitable DNA barcode. -
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QUASI is a toolkit to rapidly assess the quality of shRNA-Seq based data and call differential abundance using common statistical inference methods (DESeq, edgeR, baySeq).
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GGI stands for "General Graphics Interface", and it is a project that aims to develop a reliable, stable and fast graphics system that works everywhere. We want to allow any program using GGI to run on any platform requiring at most a recompile.
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miRNA Temporal Analyzer (mirnaTA)
Differential expression analysis tool for miRNAs in temporal studies
...The mirnaTA requires that users provide data from a minimum of two time points and analyze up to 20 time points. To normalize data and remove technical variability, Normal Quantile Transformation (NQT) was used, and the normalized data is analyzed using linear regression model to locate any miRNAs which are differentially expressed in a linear manner. Any miRNAs with P-value<0.05 are considered statistically significant. Remaining miRNAs which did not fit in linear model are further analyzed in two different methods: (1) if the number of time points <3, CDF of the normal distribution, and (2) if the number of time points is >= 3, ANOVA is utilized. ... -
AI-generated apps that pass security reviewRetool lets you generate dashboards, admin panels, and workflows directly on your data. Type something like “Build me a revenue dashboard on my Stripe data” and get a working app with security, permissions, and compliance built in from day one. Whether on our cloud or self-hosted, create the internal software your team needs without compromising enterprise standards or control.
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openlsm - Web based open source, Linux Server Management(LSM) -LAMP ,FTP,Jabber, Samba,NFS,LDAP and MySQL based virtual hosting, Squid,Backup,Quota,Mail ,spam-assassin, mailable,Asterisk, web hosting, Load balancing, nagios and ganglia monitoring.
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AirChat
Free Communications For Everyone
AirChat is a proof-of-concept communication system that works without the internet or cellular networks, using audio over radio links to move messages between nodes. It couples a lightweight packet format with asymmetric keys to enable addressed delivery, optional end-to-end encryption, and anonymous broadcast when encryption is disabled. The software talks to modem software such as FLDigi via XML-RPC, letting one machine handle radio I/O while others run the AirChat service, and it can also ride any device capable of transmitting audio, including low-cost handheld radios. ... -
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Notifies about updates on zhurnal.lib.ru using RSS. // Извещает об обновлениях на самиздате (zhurnal.lib.ru) при помощи RSS.
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Redhat Linux Oracle OVM Systems Monitor
Redhat Linux OVM System Performance Monitoring
It's a very light Redhat Linux and Oracle OVM System Performance Monitoring tool written in Perl using rrdtool for Database and Graphing. Allows you to query the RRD database given a set of dates and generates a web based graphs. Easy to install. Uses less disk space than most performance monitoring tool. Data of each host monitored is kept for 2 years and occupy less that 25 MB of disk space. -
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gnumex
Compile matlab mex files with gcc on Windows Platforms
Gnumex is a package that allows Matlab mex and engine files written in C, C++, Fortran 77 or Fortran 95 to be compiled with MinGW (or Cygwin) MS Windows versions of gcc, gfortran or g95. NOTE: Newer versions of Matlab now natively support Mingw, negating the need for this package. -
Grafana: The open and composable observability platformGrafana is the open source analytics & monitoring solution for every database.
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regutils
regutils - Win9x registry tools in Unix C & INI file tools in Perl
Regutils is a collection of programs to help in managing the configuration of Windows software and systems. The utilities can be used to apply user and machine specific customizations on the fly as users log in or as machines are booted. They can also be used to identify and correct similarities and differences between software configurations. These may be helpful in debug situations or when consistency or differences need to be maintained. The regutils package was initially created... -
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seppdflatex
Build a large LaTeX book with separate linked chapters
seppdflatex is a Perl script which automates a lot of the tasks needed to compile PDF documents from LaTeX source for a multi-volume book, or a book with many huge chapters which you may not want as a single document, but which should all be unified by cross-references and external hyperlinks, so a PDF reader will open a link to an external chapter PDF file. The Table of Contents and LOF and LOT are made for all chapters, and the TOC, LOF, LOT are all hyperlinked to the correct external PDF chapter files using zr-ref and xr packages from CTAN. But you have to write the correct LaTeX source. The script seppdflatex does the compilation and formatting of Table of Contents and such-like and separates out the chapters as standalone PDF files. The script uses the free software pdftk and pdfsam-console, as well as a bunch of handy CPAN modules, which you will need to install first. -
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...It uses approximate string matching technique and protein domain analysis to detect intact LTR retrotransposons. In addition, it identifies partially deleted or solo LTRs using profile Hidden Markov Models (pHMMs). MGEScan-non-LTR is a software for the identification of non-LTR retrotransposons in genomic sequences, following a computational approach inspired by a generalized hidden Markov model (GHMM). References: 1. M. Rho et al., "De novo identification of LTR retrotransposons in eukaryotic genomes", BMC Genomics (2007) 8:90. 2. ...
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Protdraw
Create portable, flexible domain drawings of protein sequences
...Go to https://github.com/eserte/perl-tk and click the Download zip button. Run the unzip command, cd to the extracted directory and follow the directions in the 'INSTALL' file (using 'sudo' if necessary). ProtDraw creates flexible, easily-interpretable and portable illustrations of the domain structures of input sequences. ProtDraw is accompanied by makeProtDraw, a helper program which runs hmmer3 on a specified set of hidden Markov models and formats results for ProtDraw. Highest-scoring domains are selected in cases of overlap. ... -
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CAPE RNA
Classification based Analysis of Paired Expression data of RNA
CAPE RNA is package of command-line tools for integrated analysis of miRNA-mRNA expression data. miRNA-mRNA interaction states are assigned for each sample independent of a priori known experimental groups. Using these interaction classifications Jaccard-indexes are calculated to evaluate the quality of a predicted interaction based on the distribution of assigned interaction states compared to experimental groups. In addition, negative correlation between miRNA and mRNA expression can be analyzed. -
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basecv
BCV is DNA base caller with vocabulary
The Base Calling with Vocabulary (BCV) software package is intended for analysis of direct (population) sequencing chromatograms using known vocabulary sequences similar to the target DNA. The current version of BCV can only process chromatogram files obtained on Applied Biosystems capillary sequencing machines (ABIF file format). -
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X11::GUITest, is a Perl package, used for controlling applications by means of user emulation. This can be used to interact (SendKeys, ClickMouseButton, FindWindowLike, etc.) with applications running under an X Windows environment. Including applications built (GTK+, Qt, Motif, etc.) upon X11 / Xlib. You may find that this mechanism is easier to use then that provided by xautomation or xdotool.
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gitslave
Coordinated multi-repository super-projects for Git
Gitslave is a script for coordinated version control of large projects combining code from multiple independent repositories using Git. More flexible than traditional git submodules, gitslave provides a simple wrapper around command-line git that manages a directory tree with multiple subsidiary ("slave") git repositories in sub-directories of a "master" git repository. Any git command run from the "gits" wrapper will be performed in all the git repositories; for example gits checkout -b newbranch will create the new branch in all repositories. ... -
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Use this program to automatically fetch and calculate your IGNOU BCA or MCA percentage with just a click of a button! ******************************** UPDATE ********************************** IGNOU has switched to using HTTPS for gradecard access, as a result this software is not working anymore. HTTPS support can be added but i am pressed for time. No problem though, i've created another way to calculate your percentage, please visit: http://ignourescalc.sourceforge.net/ ***************************************************************************
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catch-http
Captures and extracts HTTP connections
Perl script for capture HTTP conections and extract the transmited files. Uses libmp3-tag-perl and tcpflow. -
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This project is to provide a repository of Perl scripts, or links to where such Perl scripts might be found, for use on Fidonet Technology Networks (FTN) systems. A longer term goal is for the development of Perl Module(s), using the "FTN" namespace.
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Bioinformatic tools for analyzing an orfeome using translated ORFs and compares each ORF to the provided Orfeome/Proteome. Our script uses NCBI BLAST run locally and MySQL as the main engines in a new and interisting way. It is designed specifically for Poxvirus genomes, and provides the VACV-COP nomenclature and Cowpox Ortholog groups per each ORF. The BLAST stats are generated when compared to the Proteome you provide.
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Open heart internet API solution
Heart internet API script set
Perl heart internet API integration. This project is a PERL implementation of web hosting and customer management using the heart internet API. Using the API it will automate package creation, deletion domain registration and billing. Currently its work in progress but the aim is to be a full replacement for HostPay for users who need finer control over the scripts/templates and functionality. -
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wVDR is a smart Video Disk Recorder using "vcr" by Bram Avontuur. It features programming the schedule by wishes (e.g. "every movie with actor XY") in addition to conventional "channel, start time and duration"
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primeScaff is intended to automate the sometimes tedious process of manually designing specific primer pairs around gaps of genomic scaffolds and speedup the genome finishing stage of a genome sequencing project. It incorporates de-novo repeat finding using RECON to avoid as much as possible designing primers in repetitive regions and offers the possibility to easily fine-tune the primer design options using primer3. It outputs the repeat, gap and primer annotations in gff2 and gff3 to easily load and visualize the results using tools like UGENE (recommended) or artemis.
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