Showing 669 open source projects for "linux script"

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  • 1
    Bioinformatic tools for analyzing an orfeome using translated ORFs and compares each ORF to the provided Orfeome/Proteome. Our script uses NCBI BLAST run locally and MySQL as the main engines in a new and interisting way. It is designed specifically for Poxvirus genomes, and provides the VACV-COP nomenclature and Cowpox Ortholog groups per each ORF. The BLAST stats are generated when compared to the Proteome you provide. It can be easily adapted for other genomes.
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  • 2
    git-cal

    git-cal

    github like contributions calendar on terminal

    git-cal generates a terminal-friendly contribution calendar for your Git activity, echoing the familiar heatmap seen on hosting sites but rendered in plain text. It scans your repositories’ commit history and aggregates changes per day, then prints a compact grid that highlights streaks and quieter periods. The output works in standard shells, making it handy for dashboards, status emails, or a lightweight snapshot of productivity without opening a browser. Options typically let you choose...
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  • 3
    Proxyp

    Proxyp

    Multithreaded Proxy Enumeration Utility

    Proxyp is a small multithreaded Perl script written to enumerate latency, port numbers, server names, & geolocations of proxy IP addresses. This script started as a way to speed up use of proxychains, which is why I've added an append option for resulting live IP addresses to be placed at the end of a file if need be. Requires IP::Country module and root/administrator privileges. "No man is free who is not master of himself" --Epictetus "For a man to conquer himself is the first...
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  • 4

    Pitah

    Pitah - a collection of administrative scripts.

    Pitah is the (Egyptian, think Ptah) name of a collection of administrative scripts designed to make your life easier. Or not, depending on how you (want) to use it. I therefore cannot give any warranty, but you can use them under the GPL, if that is not nice ;)
    Downloads: 2 This Week
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  • 5
    Open heart internet API solution

    Open heart internet API solution

    Heart internet API script set

    Perl heart internet API integration. This project is a PERL implementation of web hosting and customer management using the heart internet API. Using the API it will automate package creation, deletion domain registration and billing. Currently its work in progress but the aim is to be a full replacement for HostPay for users who need finer control over the scripts/templates and functionality.
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  • 6
    'watchbasedir' is a simple perl script front-end for 'genbasedir' utility which automagically updates 'base' after package files changes.
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  • 7
    Yahoo Group Archiver was a command line utility to interact with Yahoo Groups. Currently we can download the messages(without the attachments), everything from the files section and all the images from the photo section along with their hierarchy on Yahoo Grab the latest code from SVN - since I have moved to a rolling release instead of versioned releases. https://sourceforge.net/p/grabyahoogroup/code/ [ALERT] The new neo interface has broken the script and I have not found any easy...
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  • 8
    FetchYahoo is a Perl script that downloads mail from a Yahoo! account to a local mail spool. It downloads all parts and attachments and then deletes messages unless requested not to. It can also forward messages and repeat with a given interval.
    Downloads: 47 This Week
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  • 9
    parastructure is a perl script collection to run the population genetics software STRUCTURE from Pritchard et al. 2000 (http://pritch.bsd.uchicago.edu/structure.html) in parallel on a cluster (beowulf type). Each run of K (the number of populations) is executed separately on each CPU of the cluster trough queue system based on PBS. A summary statistics table and distruct figures (Noah Rosenberg: http://www.stanford.edu/group/rosenberglab/distruct.html) are built at the end of the run. A...
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  • 10
    FastAlign.pl

    FastAlign.pl

    FastAlign is a perl script which uses the heuristic method of tfasty

    FastAlign.pl provides a more intuitive output to find exon-intron junctions. The query string is in amino acids and the hit string is in nucleotides. There are extra nucleotides at the end of the hit string (option -diff and by default = 10), that allow to verify if the intron start with common rules (5'-GTGCGA-... for group II intron and after an exonic T for group I intron). If you have Emboss, you can genarate a graphic with option -graph 1. Dependencies: - Perl - Bioperl - UNIX...
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  • 11
    latexdiff is a Perl script, which compares two latex files and marks up significant differences between them (i.e. a diff for latex files). Various options are available for visual markup using standard latex packages such as "color.sty".
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  • 12

    ReferenceFree

    Scripts for reference free genomic analysis

    These are Python scripts plus C/C++ programs for automating the reference free genomic analysis described in: Kua C-S, Ruan J, Harting J, Ye C-X, Helmus MR, et al. (2012) Reference-Free Comparative Genomics of 174 Chloroplasts. PLoS One 7(11). http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0048995 Analytical concept conceived by CHCannon and CSKua. Original script written in Mathematica by CHCannon.
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  • 13
    rcbrasil-firewall
    This is a firewall and an authenticated gateway script written in perl and bash translating rules to iptables and squid.
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  • 14

    env2

    Convert environment variables between scripting languages

    A unix perl script to convert environment variables between scripting languages. For example, convert csh setup script to bash or the other way around. Supports bash, csh, ksh, modulecmd, perl, plist, sh, tclsh, tcsh, vim, yaml, and zsh. Complements http://modules.sourceforge.net/
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  • 15

    AHT (Ashiyane Hack Tools Ver) 1.1

    Perl Hacking Tools (BackTrack)

    This is a perl script for hacking .. It Will make hacking easy for You .. It is For BackTrack This Script Contains This tools : Local File Disclource (LFD) Checker Scanning the whole netmask and returning IP and MAC BackConnect Tools Proxy Checker Reverse IP Add a User With Admin Access (Windows) Add a User With r00t Access (Unix) Grab Cpanel Users Remote Port Scanning With NetCat SQL Injection Scanner MD5 Hash Cracker (Online) Admin Page Finder Make Uploader With Echo Method (Linux Servers) Service Scanning BruteForce Services With Medusa And Hydra (Backtrack) Test Lfi With php:// Bypass Method Cms Analyzer (Beta Version) Server Scanning With Nmap Remote Command Execution Console Fck Editor Scanner
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  • 16
    NRK opptak

    NRK opptak

    Download video and audio from NRK.

    Script to download video and audio from tv.nrk.no, radio.nrk.no, nrk.no/skole and www.nrk.no. See wiki for more info.
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  • 17
    Web Man

    Web Man

    A website manager

    Web Man controls the large-scale aspects of your website. You can install navigation bars, check links, and do other web site operations. Web Man is an open source partial work-alike for Microsoft Front Page (TM) or Web Expression (TM). Beginning with release Alpha 009, the download button downloads an installer script. Put the script where you want Web Man to run, become root, and execute the script with Perl.
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  • 18
    Honeyd2MySQL

    Honeyd2MySQL

    Utility to move honeyd.log entries to a MySQL database.

    This is yet another simple piece of software that extracts all the basic stats from honeyd’s text-based log files and inserts them in a MySQL database. Then you can run some queries and of course visualize the data if you want to. Many things are hardcoded or dead simple, but it does the job. The file is a modified version of “honeyd_importer” perl script originally writen by Joshua Gimer and shared through “honeypots” mailing list.
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  • 19

    passphrase-generator

    Generate a set of random passphrases for you to choose from.

    Easy to use command line based strong passphrase generator. Implemented as a self contained perl script that should work on many unix like systems. The passphrase-generator defaults to only 3 words instead of the 4 suggested by XKCD, but uses a larger dictionary found in many unix like systems at /usr/share/dict/words. It also provides estimates for the entropy of the generated passphrases. The randomization is based on /dev/urandom and SHA1. See http://xkcd.com/936/ for an...
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  • 20

    am_utils

    Linux utils by AM

    una serie di piccoli/grandi script e programmini di supporto alla vita linux e la sua shell. * acpiStat (visualizza stato alimentazione batteria e risorse memoria) * backup.sh (script bash di backup per partizioni LVM con supporto crittografia e backup incrementali) * makecd.sh e makedvd.sh (con un comando masterizza quello che ti pare!) * netload (aluta il carico di rete di una interfaccia) * title.sh (modifica il titolo della finestra xterm) * xinfo (usa osd_cat per visualizzare a schermo in modo continuo statistiche di sistema) * myOrphan (usa deborphan e genera un report HTML) * altro ancora...
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  • 21

    check_backuppc_shares

    Another Nagios plugin for BackupPC

    This bash-script checks that backups are not too old, that the last backup had no errors, that all shares and subshares exist in the data root directory, etc. This plugin and the "check_backuppc" check sligtly different things, and in different was. You can use both... Tested on: BackupPC 3.2.1 / Ubuntu 12.04 Should work in most similar systems i think. Let me know otherwise (create a ticket!). Installation is easy: Just put the check-script inyour nagios server, and the other...
    Downloads: 0 This Week
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  • 22
    almtools

    almtools

    Collection of Open Source tools for HP ALM

    Collection of Open Source and free tools to be used for HP ALM administration, customization, and also end-user usage. This is a community effort. Feel free to use, share and contribute back!
    Downloads: 0 This Week
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  • 23

    umlaute

    This script corrects vowel mutation (Umlaut) errors in filenames

    I have written this short script to correct vowel mutation (Umlaut) errors in filenames. This errors typically occur when you copy files to a system with UTF-8 charset from a system using another charset. One typical case is when a Windows-Client transfers files via FTP on a server using UTF-8. Such errors can't be corrected using convmv.
    Downloads: 0 This Week
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  • 24
    avestafonts

    avestafonts

    Avestan Unicode Fonts

    The glyph outlines origin from Yasna 10 of the manuscript of Tehran University Library, nr. 11263. The scanned manuscript can be viewed under Ave976 on wwww.avesta-archive.com In the manuscript long [i] and long [u] do not differ, as well as both short and long [o]. Nevertheless, long [u] and short [o] are mapped in the font. Their outlines follow the script style of the manuscript. The letters for [θ] and [x] have two different shapes in the manuscript, so I have added one of each of...
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  • 25
    Datenhangar ist ein Perl Directory Listing Script das seinen Dienst als Downloadbase effizient verrichtet. Dabei ist es simpel aufgebaut und doch kann man leicht mit etwas CSS Wissen, das Design leicht aendern.
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