Search Results for "gnu/linux" - Page 40
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Showing 7986 open source projects for "gnu/linux"
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SNiPlay is a web-based pipeline and database for SNP analysis and management
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Shoal
A lot of fish in a shoal, in a gigantic scientific ocean.
Ours organization website GCModeller.org is coming online soon! Shoal Shell is the sub project for the "genome-in-code"(http://code.google.com/p/genome-in-code/) virtual cell modelling project of the bacteria Xcc 8004. Shoal Shell aim at provide the modelling tool and the debugging tool for the GCModeller virtual cell modelling, And from the extendible library package, shoal shell can manage to accomplish the entire modelling job for any other bacteria species. Shoal Shell Project... -
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This web script allows maintaining a set of name/description pairs on a web page as a list of items that will automatically be cross referenced. Everyone can add to and edit. This was designed to keep track of all the TLAs floating around my company.
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SGI-PackPDV
Gerador/instalador de volumes de atualização
Desenvolvido para necessidades (até então) exclusivas da SGI Sistemas. -
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ipmgm is a perl CGI that gives you a GUI for managing your IP space. it can interact with any DNS and with a small xml based configuration give the ability to search, change and view all the domain records.
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It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search.
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Stat cvs/svn Code Change
stat. cvs,svn code changes and generate html report
It's a web application which provides a unify solution to stat. CVS/SVN repository modules code change information and generate html reports. User can browse line of change, file of change, code diff, check-in comment and so on, it can stat. more repository modules one time. After repository modules configured, stat. is simple like a search. It's the mirror project of CodeChangeViewer: http://sourceforge.net/projects/ccv/. -
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Corrupt DOCX Salvager
Extract text from corrupt DOCX files where Word itself fails.
Previously known as Damaged DOCX2TXT, this GUI program will extract text from damaged/corrupted Word 2007 - 2013 DOCX format documents. DOCX files are actually zipped collections of mostly XML files. The main text in docx files is found in document.xml file in the collection. Corrupt DOCX Salvager uses 7Zip, an unzipper that sometimes unzips partially corrupt document.xml files despite reporting an error. XML as a format is unforgiving of data corruption but Corrupt DOCX Salvager... -
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CheckGmail is a system tray application that checks a Gmail account for new mail. It is fast, secure and uses minimal bandwidth via the use of atom feeds.
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Go From AI Idea to AI App FastAccess Gemini 3 and 200+ models. Build chatbots, agents, or custom models with built-in monitoring and scaling.
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Firmware for Cypress' EZ-USB (AN2131) device that lets you use keyboards, mice etc. as USB compliant Human Interface Devices.
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Integrated Hospital Information System. PHP,mySQL,PostgreSQL. Surgery, Nursing,Outpatient,Wards,Labs, Pharmacy, Security,Admission,Schedulers, Repair, Communication & more. Multilanguage, WYSIWYG forms, userconfig, embedded workbots. Modular & scalab
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TE-locate
a tool for calling transposons
TE-locate is a tool to locate all copies of sequences in a reference sequence using read-pairs. TE = Transposable Element Input is NGS-data. Please download all files first (including the demo data) and make your first run then. -
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Mad Dog Backup is a simple manual backup system. The software allows authenticated users to submit and retrieve files to and from a backup system via a Web browser. The official source repository is located at https://github.com/textbrowser.
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Xtreme Flash Policy Server
Adobe Flash Socket Policy File Server (cross-domain-policy)
Adobe Flash Socket Policy File Server. cross-domain-policy file delivering service Focused (but not limited to) on IRC environments Xtreme Flash Policy Server, although it's designed to be used in conjunction with LightIRC (http://www.lightirc.com/) it's suitable for many other environments which needs to serve cross-domain-policy files through network as long as meets Adobe specifications (more info about Adobe cross-domain-policy:... -
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TransGeneScan
TransGeneScan is a gene finding tool for metatranscriptomic sequences
NOTE: TransGeneScan is migrated to Github (https://github.com/COL-IU/TransGeneScan). TransGeneScan is no longer maintained in SourceForge. Please find the latest version in Github. TransGeneScan is a gene finding tool for Metatranscriptomic sequences. TransGeneScan incorporates strand-speci c hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan... -
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PhyloTrack
PhyloTrack, D3.js and JBrowse for phylogeny and positioning of samples
PhyloTrack is a JavaScript--based software tool that integrates the D3.js library for data visualization with the JBrowse tool for genome browser representation. It requires a phylogenetic tree of the common Newick data format as input, as well as three meta data files for samples, clade-defining nodes and clade color definitions - all in tab delimited format. Functionality within PhyloTrack shows the informative markers at each node in the phylogenetic tree, therefore highlighting... -
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The Thot toolkit repository has moved to http://daormar.github.io/thot/ Thot is a toolkit for statistical machine translation. The new Thot toolkit includes fully automatic and interactive machine translation, incremental training of statistical models, parallel estimation, ...
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iMir
Integrated pipeline for HT miRNA-Seq data analysis
Processing of smallRNA-Seq data to gather biologically relevant information requires application of multiple statistical and bioinformatics tools from different sources, each focusing on a specific step of the analysis pipeline. The analytical workflow can be challenging for the continuous interventions by the operator, a critical factor when large numbers of datasets need to be analyzed at once. To allow a flexible and comprehensive analysis of smallRNA-Seq data we designed a novel modular... -
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Sipura2NCID
SIPURA brand ATA to ncidd gateway
This is a SIPURA/LinkSys/Cisco brand ATA (analog telephone adapter) to NCIDD (network caller-ID daemon) gateway. sipura2ncid uses the ATA's debug message output to a syslog server. No need for packet snooping or network rearrangement. -
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CIMS
Crosslinking induced mutation site analysis
This package includes the scripts to detect statistically reproducible crosslinking induced mutation sites (CIMS) and cross linking induced truncation sites (CITS) from HITS-CLIP data. References: Moore, M.*, Zhang, C.*, Gantman, E.C., Mele, A., Darnell, J.C., Darnell, R.B. 2014. Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis. Nat Protocols, 9:263-293. Zhang,C.†, Darnell, R.B.† 2011.... -
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HaCi - IP Address Administration
Web based IPAM tool
HaCi is an IP Address / Network Administration Tool with IPv6 Support. It stores its data efficiently in a relational Database and uses a treelike Strukture to illustrate supernets and subnets. Additional (template) data can be linked to each network -
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openSEQ
NGS compute distro proloaded with pipeline analysis software
Forked Ubuntu 14.04 minimal install with XOrg and FluxBox desktop environment for web-based pipeline construction and job submission. HOWTO: 1) Set VM network settings to a bridged adapter type. 2) Load VM to client 3) From host: $ ssh -X ubuntu@<foobar> 'firefox && butterfly.server.py --unsecure' --- passwd = 616287xx 5) or ssh into host with X forwarding, and type runme This will launch an X-session of Firefox on the client, which will then be forwarded to the host. The... -
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arlogd
a remote logger
Arlogd provides remote logging. A daemon on a client host watches all fifo's in some directory. Anything written to a fifo is appended to a corresponding file on the loghost. It is not necessary to change or reconfigure logging applications ; you can just replace a log by (a symlink to) a fifo. -
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The Program to Assemble Spliced Alignments (PASA) is used to automatically incorporate ESTs and full-length cDNAs into gene structure annotations, in the process annotating UTRs, alternative splicing variations, and polyadenylation sites.
