Search Results for "java on java" - Page 3
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Showing 642 open source projects for "java on java"
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX. Currently CSBB provides 18 modules focused on analytical tasks like performing upper-quantile normalization, interactive visualization and next generation sequencing pipelines. ... -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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Web-CAT
Open-source automated grading of programming assignments
Web-CAT is a plug-in based web application for automatically grading programming assignments in many programming languages. This project also provides Eclipse plugins for electronic submission and feedback services directly from the Eclipse IDE. We now use github for source code control (https://github.com/web-cat), although all file releases are still provided here through SourceForge. The CVS repository here is for archival purposes only. -
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Translation team with the primary objective to translate and maintain the translations of some useful SourceForge.net Projects. GUI and CLI applications, PHP, Java and Documentation for Linux, Apple MAC & BSD and Windows. More info on our homepage.
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NamelessROM
Custom ROM for Android
NamelessRom is opportunity; an opportunity to have a voice to the development team of the after-market firmware that you run on your device. The main goal of NamelessRom is to provide quality development for android devices, phones, and tablets alike. NamelessRom developers are available nearly 24/7 and respond to bug reports and feature requests almost instantly. This availability will allow you, the end-user, to have direct input into exactly what features and functions are included on the... -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data.... -
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PreprocesssorWizard
WYSIWIG conditional compilation preprocessor for Java etc.
A WYSIWYG Conditional Compilation Preprocessor for Java, Perl, C, C++, Basic, PowerShell, C#, Javascript, and other programming languages. Many C and C++ developers rely heavily on the C preprocessor, and lament the lack of a preprocessor in Java, scripting languages, and other programming languages. The principal objection to a preprocessor is that it makes one's code difficult to read. -
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The Node Director is a tool for managing distributed, hetergeneous UNIX Systems. Its functionality includes System Configuration, Application Distribution, NIS & NIS+ Management, User Creation and Dynamic System Documentation.
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Enterprise-grade ITSM, for every businessFreshservice is an intuitive, AI-powered platform that helps IT, operations, and business teams deliver exceptional service without the usual complexity. Automate repetitive tasks, resolve issues faster, and provide seamless support across the organization. From managing incidents and assets to driving smarter decisions, Freshservice makes it easy to stay efficient and scale with confidence.
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX and Windows platforms. Currently CSBB provides 16 modules focused on analytical tasks like normalization, visualization, statistics, RNA-SEQ etc. -
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epyunit
PyUnit and PyDev extensions for arbitrary Executables
The package 'epyunit' provides extensions for PyUnit and PyDev. * Extensions for PyUnit - Unittests for arbitrary executables. * Extensions for PyDev - Automation of search and load of pydevd.py The extensions are applicable from commandline and/or within Eclipse. Online manuals: - https://pythonhosted.org/epyunit/ PyPi repository: - https://pypi.python.org/pypi/epyunit Current application examples are: - bash-core - http://bash-core.sourceforge.net Nickname -... -
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SIGAR (System Information Gatherer and Reporter) is a cross-platform, cross-language library and command-line tool for accessing operating system and hardware level information in Java, Perl and .NET.
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JOPUX
JOPUX - a flexible and scalable application platform!
JOPUX is a Linux-distribution and family of free open source Linux appliances, built on openSUSE and Gnome, and designed for quickly setup and running Linux on servers and workstations. With a fully documented library of resources, JOPUX allows the customization of every aspect of a Linux installation and cloning, including administration and the rapid integration with third-party applications JOPUX provides more developer power while making the user experience all the more friendly.... -
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Lascer liefert zu einer Menge binär klassifizierter Attribut-Vektoren eine Menge von Regeln zur Beschreibung der Klassen. Die Regeln können auch mathematische Funktionen enthalten, deren Art vorgegeben werden kann.
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The Software Testing Automation Framework (STAF) is a framework designed to improve the level of reuse and automation in test cases and test environments. The goal of STAF is to provide a complete end-to-end automation solution for testers.
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MGSyn
MGSyn - Automatic Synthesis for Industrial Automation
...It is advised to use 32-bit version (Eclipse) associated in the "MGSyn supplementary files", as the 64-bit version will by default demand huge memory, which may lead to Java exceptions. -
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BioC
We describe a simple XML format to share text documents and annotation
A minimalist approach to share text documents and data annotations. Allows a large number of different annotations to be represented. Project files contain: - simple code to hold/read/write data and perform sample processing. - BioC-formatted corpora - BioC tools that work with BioC corpora BioC goals - simplicity - interoperability - broad use - reuse There should be little investment required to learn to use a format or a software module to process that format. We are... -
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Cress Tool Suite
Cress is a comprehensive toolset for graphical service/workflow design
...It simplifies service creation to drawing diagrams, clicking buttons and defining a few tool parameters. All key functions of Cress can be controlled from the Chive diagram editor. Cress is written using portable and widely used languages (Perl and Java). It can be extended by a developer for other kinds of services that can be characterised by activity flows. -
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PLP
Powerfull pre-processor
...Perl is used as "control language" that is embedded in the Verilog code (or any other code) to generate code on the fly. It is used commonly as a Verilog pre-processor but can be used with any target/output language (C, C++, Java, VHDL, plain text etc) -
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Clue is an experimental C compiler that generates code for high-level dynamic languages such as Lua, Javascript, Perl5 and Common Lisp, as well as non-dynamic languages like C and Java. It supports the complete ANSI standard, including pointer arithmetic
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GMOD is a set of interoperable open source software components for visualizing, annotating, and managing biological data. See http://gmod.org for more.
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CleanCode
.NET, PowerShell, SQL, Java, Perl, and Javascript developer libraries
Develop clean code with our .NET components (plus PowerShell, SQL, Java, Perl, and JavaScript components as well!). CleanCode highlights include user controls, a validation engine, a diagnostic system, an XML/HTML pre-processor, and a variety of articles on code design. -
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Collaborative infrastructure for Collaborative Product Development (manufacturing) within Extended and Virtual Enterprise.
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