Search Results for "python data analysis" - Page 2
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Showing 240 open source projects for "python data analysis"
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mapska
The Murder Accountability Project's Serial Killer Algorithm
A much improved Linux/Perl implementation of the Murder Accountability Project's Serial Killer Algorithm. This module was tested with the "SHR76_19.csv" available from www.murderdata.org/p/data-docs.html. This module provides functions to prepare the data, upload to a database and view the identified clusters. Download SHR76_19.csv (23/03/2021) - https://www.dropbox.com/s/ye37woe6et05qgs/SHR76_19.csv.zip?dl=1 For information on this algorithm and the Murder Accountability Project please... -
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ModST
A tool to search post-translational modifications in a blind mode
ModST (pronounced as modest) is a tool to search post-translational modifications (PTMs) in mass spectrometry data in an unrestrictive manner. It can search for hundreds of modification without any user provided information for variable modifications. Due to data level parallelization implemented through perl it is fast, portable and easy to use to identify and analyse PTMs in MS/MS data. -
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Pretty Damn Quick (PDQ) analytically solves queueing network models of computer and manufacturing systems, data networks, etc., written in conventional programming languages. Generic or customized reports of predicted performance measures are output.
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XMLTV (http://xmltv.org/) is for grabbing TV listings primarily from websites. It has a grabber for Danish Television that grabs from http://tv.tv2.dk, but here we maintain serveral others. You can find documentation on http://niels.dybdahl.dk/xmltvdk
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LiVES
LiVES is a Video Editing System. It is designed to be simple to use, y
LiVES mixes realtime video performance and non-linear editing in one professional quality application. It is designed to be simple to use, yet powerful. It is small in size, yet it has many advanced features. Using LiVES, you can start editing and making video right away, without having to worry about formats, frame sizes, or framerates. It is a very flexible tool which is used by both professional VJ's and video editors - mix and switch clips from the keyboard, use dozens of realtime... -
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COHCAP
City of Hope CpG Island Analysis Pipeline
COHCAP (City of Hope CpG Island Analysis Pipeline, pronounced "co-cap") is an algorithm to analyze single-nucleotide resolution methylation data (Illumina 450k methylation array, targeted BS-Seq, etc.). Please note: 1) The SourceForge version of COHCAP is no longer being updated. Please see the GitHub version: https://github.com/cwarden45/COHCAP This was the source repository for the Bioconductor version, with some changes after the decision to only provide the code through GitHub... -
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Microarray assosiated motif analyzer
Cis-element prediction tool from microarray data
We developed a novel clustering-free method, microarray-associated motif analyzer (MAMA), to predict novel cis-acting elements based on weighted sequence similarities and gene expression profiles in microarray analyses. Simulation of gene expression was performed using a support vector machine and based on the presence of predicted motifs and motif pairs. The accuracy of simulated gene expression was used to evaluate the quality of prediction and to optimize the parameters used in this... -
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VecText
Converting text to a structured representation
VecText is an application that converts raw text to a structured format suitable for various data mining software. The application is written in interpreted programming language Perl. A part of the functionality is realized by external modules (e.g., Lingua::Stem::Snowball for stemming). The graphical user interface enables user-friendly software employment without requiring specialized technical skills and knowledge of a particular programming language, names of libraries and their functions... -
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ggplot2-book
ggplot2: elegant graphics for data analysis
The ggplot2-book repository contains the source for ggplot2: Elegant Graphics for Data Analysis, written by Hadley Wickham. The book explains the theory and application of the ggplot2 package in R for data visualization, guiding readers through its layered grammar of graphics approach. It serves as both a practical guide and conceptual reference for building advanced plots and mastering ggplot2. -
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IPAC-NG is the iptables/ipchains based IP accounting package for Linux. It collects, summarizes, and nicely displays IP accounting data. Ipchains and (preferably) iptables are supported. Logs are stored in files, a gdbm or a PostgreSQL database.
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The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.
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PumpedUp
Performance monitoring and logging software for Linux and Windows.
PumpedUp gathers system performance data on a second by second basis and creates real time or static graphical web pages. It can quickly point out maximized resources on a system. It also has options for sending data to Redis / Logstash for analysis, or Nagios for alarming. PumpedUp runs an insecure web server on port 8080 by default and requires you to provide your own security for that port. You can disable this functionality by editing the PumpedUp configuration file. After... -
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scriptLattes is an open-source system to create academic reports of groups based on curricula vitae of the Brazilian Lattes Database.
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Sagacity
Security Assessment Data Management and Analysis Tool
We have migrated development of Sagacity to GitHub at https://github.com/cyberperspectives/sagacity Sagacity is a vulnerability assessment and STIG compliance data management tool designed to make security testing more efficient, effective and complete. Security assessments, especially those done for DoD and Federal organizations, produce tremendous amounts of scan and compliance data that security engineers must sort through and deconflict, identify untested requirements, and somehow... -
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miARma-Seq
a A suite designed to study mRNAs, miRNAs and circRNAs
... software in a single bundle, allowing a complete analysis from raw data. All the capabilities can be easily and simultaneously enabled at will, regardless the step in the workflow. -
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Alien Cipher
A bespoke symmetric cipher.
... in a way that allows the cipher to produce encoded output that is locked to a key of arbitrary length without padding. Based upon some random data points the cipher produces encoded output that is non-deterministic in nature, the same key and message will never produce the same output each time it's run. The cipher attempts to render output that is resistant to several types of analysis although this has yet to be proven. Please note that I make no claims to this being safe. Cheers o7 -
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CSBB-v3.0
CSBB - Computational Suite for Bioinformaticians and Biologists
CSBB is a command line-based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java, python and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX... -
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CSBB-v2.1 [CSBB-v3.0 is now available]
Computational Suite For Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX... -
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BisSNP
Bisulfite-seq/NOMe-seq SNPs & cytosine methylation caller
Now in Github: https://github.com/dnaase/Bis-tools/tree/master/Bis-SNP BisSNP is a package based on the Genome Analysis Toolkit (GATK) map-reduce framework for genotyping in bisulfite treated massively parallel sequencing (Bisulfite-seq, NOMe-seq and RRBS) on Illumina platform. It uses bayesian inference with either manually specified or automatically estimated methylation probabilities of different cytosine context(not only CpG, CHH, CHG in Bisulfite-seq, but also GCH et.al. in other... -
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Perl Web Scraping Project
Perl Web Scraping Project
... local database or spreadsheet, for later retrieval or analysis. Web scraping a web page involves fetching it and extracting from it.[1][2] Fetching is the downloading of a page (which a browser does when you view the page). Therefore, web crawling is a main component of web scraping, to fetch pages for later processing. Once fetched, then extraction can take place. The content of a page may be parsed, searched, reformatted, its data copied into a spreadsheet, and so on. -
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MOIRAI
Simple Scientific Workflow System for CAGE Analysis
Cap analysis of gene expression (CAGE) is a sequencing based technology to capture the 5’ ends of RNAs in a biological sample. After mapping, a CAGE peak on the genome indicates the position of an active transcriptional start site (TSS) and the number of reads correspond to its expression level. CAGE is prominently used in both the FANTOM and ENCODE project. MOIRAI is a compact yet flexible workflow system designed to carry out the main steps in data processing and analysis of CAGE data... -
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finhist
Simple analysis of historical financial data
I've been noticing for a while that the graphs of "growth for the last 10 years" in the mutual fund prospectuses depend a lot on the starting point: if the starting point was high (i.e. after previous growth), the following growth would look poor compared to the competition, and the other way around. So I wrote some simple scripts to try to compensate for this effect. -
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CSBB-v2.0
Computational Suite for Bioinformaticians and Biologists
CSBB is a command line based bioinformatics suite to analyze biological data acquired through varied avenues of biological experiments. CSBB is implemented in Perl, while it also leverages the use of R, java and ruby in background for specific modules. Major focus of CSBB is to allow users from biology and bioinformatics community, to get benefited by performing down-stream analysis tasks while eliminating the need to write programming code. CSBB is currently available on Linux, UNIX... -
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AlienVault OSSIM
Open Source SIEM
... dashboards and data visualization
