Search Results for "using"
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Showing 19 open source projects for "using"
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ReViMS
ReViMS, a 3D volume rendering tool for light-sheet/confocal microscopy
Reconstruction and Visualization from Multiple Sections (ReViMS), an open-source, user-friendly software for automatically estimating volume and several other features of 3D multicellular aggregates (i.e., cancer spheroid, zebrafish, fruit fly). ReViMS requires a z-stack of 2D binary masks, obtained by segmenting a sequence of fluorescent images acquired by scanning the aggregate along the z axis, using a confocal or a light-sheet fluorescent microscope. It provides a number of tools for: (a) segmenting z-stacks of fluorescence images; (b) reconstructing the 3D surface of the aggregates and estimating several features (including the volume). ReViMS is written in MATLAB (The MathWorks, Inc., Massachusetts, USA). It is an open-source tool and the source code is freely available at: http://sourceforge.net/p/revims Requirements: MATLAB R2017b and Image Processing Toolbox 10.1 or later versions. -
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ReViSP
ReViSP, a 3D volume rendering MATLAB tool for multicellular spheroids
...ReViSP is written in MATLAB (The MathWorks, Inc., Massachusetts, USA) and the source code is freely provided. Requirements for running ReViSP from the source code: MATLAB 2020a and Image Processing Toolbox 11.1 or later versions. Please, when using this software, cite these articles: (a) F. Piccinini, et al., Cancer multicellular spheroids: Volume assessment from a single 2D projection. Computer Methods and Programs in Biomedicine, 118(2):95–106, 2015. (b) F. Piccinini, et al., Single-image based methods used for non-invasive volume estimation of cancer spheroids: a practical assessing approach based on entry-level equipment. ... -
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ANDTool
Analysis Nuclei DAB (AND) Tool
Analysis Nuclei DAB (AND) Tool is a Graphical User Interface (GUI) to analyse microscopy images representing cells with nuclei stained using DAB dyes. The tool requires as input the original RGB images, and the FastRed, FastBlue, DAB channel, easily obtained using the Fiji function: "ImageJ" -> "Image" -> "Colour Deconvolution" -> "FastRed FastBlue DAB" Then, the tool first segment the nuclei using the FastBlue channel and the DAB channel, and then computes statistics by subdividing the sample in three regions according to the FastRed channel: a dark-red ROI, a light-pink ROI and a white ROI. ... -
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GTK+ IOStream
GTK+iostream, Data plots, ORB, Neural Networks, WSOLA
Create GTK+ interfaces using IOStream style code. Its simple and quick! Also providing simple data plotting (similar to Matlab/Octave), ORB (Object Request Broker), and Neural Network computations. You can create GTK+ GUIs in a few lines of code. Labels<<"Thanks for reading"; (HBox<<Labels).show(); or even one line : (HBox() << (Labels()<<"Thanks for reading")).show(); Inline code destructs the classes, but leaves the widgets/callbacks operating. -
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F-Tracker3D
A software tool for tracking fluorescent cells in 3D
F-Tracker3D is acronym of "fluorescent cell tracker in three-dimensions". It is a software tool designed to track fluorescent cells using time-lapse z-stacks of images acquired with a confocal or light-sheet microscope. First, each single cell is tracked in 2D by using the maximum intensity projections of the z-stacks and CellTracker, the free open source software available at: www.celltracker.website. Then, the 3D track of each cell is obtained analysing the z-stacks and looking for the z-plane with the maximum intensity value for the different x-y positions previously determined. ... -
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MoTrack
Matlab GUI for motion tracking
...It can be used to track the 2D motion of any object in digital videos. In manual mode the object coordinates are captured by mouse clicking on the objects position in each video frame. Automatic motion tracking is possible using reflective markers or any kind of markers that have high contrast to the surroundings. -
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GridMos
GridMos, mosaicing tool (in MATLAB) to improve cell counting.
Nowadays, the manual cell counting, performed directly by looking through the microscope’s oculars by using a tally counter and a hemocytometer, still is the gold standard method to count Live&Dead cells (Trypan Blue is typically used to stain the dead cells). However, performing the cell counting by tagging the cells in a steady image mosaic increases the reliability of the counts performed. Unfortunately, to build a mosaic of a hemocytometer's grid shows some problem due to the repeated patterns (i.e., the squared blocks of the grid). ... -
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HMM Speech Recognition in Matlab
A speech recognition system using Matlab/Simulink/Stateflow.
This project provide hidden Markov model speech recognition system by using Matlab/Simulink/Stateflow. -
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Matlab VideoUtils
Matlab Toolbox for reading and writing videos.
Matlab Toolbox to process video files, which consists on a set of classes for reading, writing, correcting light changes and generating gaussian pyramids in real time. This toolbox is designed for Windows x64, Max OS X x64 and Linux x64. Through to use of Ffmpeg, it can reproduce and create videos very fast and also do no require to load the entire video file in memory. In addition the C++ code is already compiled in order to simplify the toolbox installation. In order to stay... -
Lightspeed golf course management softwareFrom tee sheet management, point of sale and payment processing to marketing, automation, reporting and more—Lightspeed is built for the pro shop, restaurant, back office, beverage cart and beyond.
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Virtual Sound Level Meter
Virtual Sound Level Meter for analyzing calibrated sound files
...The software implements Fast, Slow, Impulse and LEQ; A, C and Flat Weighting; Ln and Noise Dose analysis; Octave and 1/3 Octave band analysis; high resolution FFT analysis and spectrograms. Band analysis can be made using fast FFT methods or slower, but ANSI standard methods. Source code requires MATLAB + Signal Processing Toolbox. Developed under MATLAB R2010a (but might work with some earlier versions) Executable version does not require MATLAB and runs under Windows XP, Vista, and Windows 7. -
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SmoothLife
A generalization of Conway's Game of Life
Conway's Game of Life is generalized to a continuous domain. OpenGL and GLSL shaders are used for real-time 2D and 3D graphics. Time stepping is done via a real to complex FFT based convolution operation. There are also two deliberately simple test implementations in FreeBasic and Matlab. A 2D version on a sphere shows that it is really not dependent on the underlying grid. -
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Rand Tree
Random Tree Generator for MatLab
RandTree is a MatLab based tree simulator program where the algorithm is based on Honda's model. We have used probabilistic generation of branches in order to simulate visually realistic tree structures. This program is designed to generate branching structures with bifurcation branching pattern (sympodial branching). By changing the probabilities and branching angles, you can generate different shapes of trees. -
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This is a MATLAB implementation of inverse compositional Active Appearance Models (AAMs), as described in the "Active Appearance Models Revisited" paper by Iain Matthews and Simon Baker.
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This application allows to generate graphics from data file in table format and a graphical configuration file XML..
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This is a program written in matlab to grade exams using Optical Mark Recognition. Samples of OMR sheets that are to be filled by students is also included. It supports rotation of up to 6 degrees as well as 180 degree rotation.
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A library providing easy, flexible, and efficient read/write access to video files using a wide variety of codecs in MATLAB on Windows and GNU/Linux platforms, using DirectShow and ffmpeg backends, respectively. Also provided are 'load' and 'imread' for bulk reading.
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golib
C++ collection mostly for image processing
libGo is a C++ class library containing all kinds of things that proved useful to me. Included are: - Linear algebra, using LAPACK and CBLAS - V4L(1) image grabber - Multithreading - Image containers (up to 3D) - Some simple optimisation code - Python embedding helper - Matlab interface - .. and other things, have a look at the HTML documentation! golib grew over many years, things I had use for have been added now and then. Some parts are better taken care of than others. ... -
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im-browser
MIB is a high-performance software package for image segmentation
Microscopy Image Browser (MIB) is a high-performance software package for advanced image processing, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets. Home page: http://mib.helsinki.fi
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