75 programs for "user mode linux" with 2 filters applied:

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  • 1
    cnsFace is a GUI for the Crystallography and NMR System.
    Downloads: 0 This Week
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  • 2
    Meredys (MEsoscopic REaction DYnamics Simulator) is a particle based stochastic simulation software designed to model and simulate reaction-diffusion systems. (http://www.ebi.ac.uk/compneur-srv/meredys.html)
    Downloads: 0 This Week
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  • 3
    DIY Genomics is an open source bioinformatics consortium intended to bring a collection of tools and libraries into the hands of small scale genomics labs for the process of sequence assembly and annotation. Projects include DIYA, MGAP, CRISPR, and DIYGV
    Downloads: 0 This Week
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  • 4
    A tool to convert mol or sdf files to SVG - scalable vector graphics. Sdf and mol files are files containing information about chemicals. The tool is written in PHP.
    Downloads: 0 This Week
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  • 5
    A Java-based tool to visualize, integrate and analyze LC-MS/MS proteomics data.
    Downloads: 0 This Week
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  • 6
    ORTEP-III with CAIRO graphics backend
    Downloads: 0 This Week
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  • 7
    Ninja is an object oriented toolkit for manipulating InChI identifiers.
    Downloads: 2 This Week
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  • 8
    JPhysChem - a mathematical modeling toolbox designed to provide an abstract layer and a comprehensive graphical front-end for general model building and specific modeling and data processing in the field of mass spectrometry and physical chemistry.
    Downloads: 0 This Week
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  • 9
    ChIPOTle 2.0 is a user friendly tool for performing peak detection in ChIP-chip signal. The tool also has functions for probe sorting, signal normalization, replication merging, and multiple correction testing in a windows interface or *nix command line.
    Downloads: 0 This Week
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  • 10
    Gaussian Output Tools is a package of simple scripts to extract data from Gaussian output files.
    Downloads: 2 This Week
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  • 11
    The Biomolecule Toolkit is a library for modeling biological macromolecules such as proteins, DNA and RNA. It provides a C++ interface for common tasks in structural biology to facilitate the development of molecular modeling, design and analysis tools.
    Downloads: 1 This Week
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  • 12
    MCDL is a small Java molecular viewer/editor for chemical structures, stored in Modular Chemical Descriptor Language linear notation. Features include accurate structure diagram generation, and Kekule chemical structure creation from aromatic bond list.
    Downloads: 0 This Week
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  • 13
    Esra is a 100% pure java library for the interactive analysis of molecular mechanics data. Mangles your data in your favorite scripting language.
    Downloads: 0 This Week
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  • 14
    Octet is an object-oriented molecular representation framework written in Java.
    Downloads: 3 This Week
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  • 15
    Comprehensive Meta Prediction and Annotation Services for Proteins: The new all-in-one prediction tool that can be easily extended to include any SOAP/WSDL-enabled prediction servers. A concise user interface lets you use the results instantly.
    Downloads: 0 This Week
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  • 16
    This project provides visual interactive interfaces to custom algorithms used in genomes research.
    Downloads: 0 This Week
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  • 17
    SPAS (Structure Property Analysis Software) is a Quantitative Structure-Property Relationship (QSPR) software.
    Downloads: 0 This Week
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  • 18
    JChemPaint Applet and Swing Application
    The JChemPaint Applet and Swing Application are Java programs for drawing 2D chemical structures like those found in most chemistry textbooks. It is based on the Chemistry Development Kit (cdk.sf.net). Downloads, tracker, and source code repository can be found on http://jchempaint.github.com
    Downloads: 1 This Week
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  • 19
    Our goal is to create an open source framework and toolset for modeling dynamic cellular network functions, and to develop a user community committed to using, extending and exploiting these tools to further our knowledge of biologic processes.
    Downloads: 4 This Week
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  • 20
    The Octet-CDK interoperability package.
    Downloads: 0 This Week
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  • 21
    LineageEvolver is a simulation system for molecular evolution. Sequence evolution is simulated using modular processes such as substitutions, gene duplication/death, horizontal gene transfer, and more.
    Downloads: 0 This Week
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  • 22
    Sage is a web-based stats system for your Folding@Home team. It is light, fast, and based on PHP and an assortment of SQL-based database management systems, so it is ideal for webservers.
    Downloads: 0 This Week
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  • 23
    A laboratory information management system (LIMS) geared towards academic research groups in the life sciences. Written in Python and using the Django framework, you run this software on your own server.
    Downloads: 0 This Week
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  • 24
    QuantimSim is a physics simulation engine. Some aspects of astrophysics, electromagnetism, relativity, thermodynamics, statistical mechanics and quantum mechanics will be included in the simulation library.
    Downloads: 0 This Week
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  • 25
    PARPs database is a web-based tool whose features include experiment annotation, protein database searching, protein sequence management.Statistical validation, , visualization, and converters from raw MS data open mzXML mzData format
    Downloads: 0 This Week
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