Showing 154 open source projects for "mpeg-4"

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  • 1
    SPADE

    SPADE

    A toolkit for developing and deploying protein structure algorithms.

    The Structural Proteomics Application Development Environment is a Python tool kit for developing and deploying bioinformatics applications. Handles graphics, analysis, and modeling of protein sequence and structure. Source and Win installers available. SPADE source code can be cloned from http://www.github.com/deaconjs/SPADE.
    Downloads: 0 This Week
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  • 2

    SIMtoEXP

    For comparison of simulation and experimental scattering data

    SIMulation to EXPeriment is software that allows the direct comparison of simulation density information with that obtained from X-ray and neutron scattering experiments, by converting the simulation data to form factors. It also calculates volume probability distributions according to a space filling volumetric model. Written in C++ and Qt, SIMtoEXP has a very simple and easy to use GUI with interactive plotting. The software was originally developed by Norbert Kucerka. The code has...
    Downloads: 2 This Week
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  • 3
    This package contains code for use with Short Read DNA Sequencing technologies, and includes packages for ChIP-Seq, Whole Transcriptome Shotgun Sequencing, Whole Genome Shotgun Sequencing, SNP Detection, Transcript expression and file conversion.
    Downloads: 2 This Week
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  • 4
    MoleCalc

    MoleCalc

    A molecular weight calculator written in Visual Basic.

    A molecular weight calculator written in Visual Basic. Unfortunately, it is only for 64-bit Windows at this time. The code files (.sln) are downloadable only. I can't figure out Git.
    Downloads: 1 This Week
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  • 5
    Nature
    Nature is an open source library for computing thermochemical and kinetic properties of complex gas mixtures. The library supports the CHEMKIN data format and a native script for defining complex gas mixtures. Nature is written in C# and does not depend on any third party tool or library. Nature interoperates natively with any .NET language including the FTN95: Fortran 95 compiler. The primary goal of the project is to deliver the open source that provides the foundation for potentially...
    Downloads: 0 This Week
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  • 6
    GSim - tool for NMR spectroscopy
    GSim - free software tool for visualisation and processing of experimental and simulated nuclear magnetic resonance (NMR) spectra.
    Downloads: 2 This Week
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  • 7
    NaRIBaS

    NaRIBaS

    Unix-based preparation and analysis toolbox for molecular simulations

    Unix-based preparation and analysis toolbox for Nanomaterials and Room Temperature Ionic Liquids in Bulk and Slab using bash scripts, Gromacs tools and Matlab functions. NaRIBaS provides a framework that decouples user input parameter and terminal based command lines. NaRIBaS does not replace a simulation software and specific analysis tools like Gromacs, but it allows iterative repetition of tasks while changing specific input parameter. The toolbox is to be understood as a scripting...
    Downloads: 0 This Week
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  • 8

    STIRRUPS

    STIRRUPS

    Downloads: 5 This Week
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  • 9
    Research and development of an ontology for the analysis and representation of comparative data for use in evolutionary analysis. For more information, please see www.evolutionaryontology.org
    Downloads: 0 This Week
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  • 10
    NMR Spectroscopy tools. See http://connjur.uchc.edu
    Downloads: 1 This Week
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  • 11
    TrajLab

    TrajLab

    MATLAB based programs for trajectory simulations of molecules

    TrajLab (which stands for TRAJectory LABoratory) consists of two sets of MATLAB program packages. While subproject MolDynSim deals with generation of molecular trajectories (and other aspects of molecular simulation), subproject MetaStable is dedicated to the analysis of molecular trajectories by detecting metastable conformations (as well as other analysis techniques). Note that each of the two sub-projects has its own SVN repository, wiki, tracker, etc: Probably TrajLab is the first...
    Downloads: 0 This Week
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  • 12

    ISAD

    Individual Synaptic Activity Detection (ISAD)

    ISAD is a peak detection software that detects individual (pre-)synaptic activity in microscopy images from neuronal cultures transfected with pHluorin. It computes synaptic signals from automatically segmented regions of interest and detects peaks that represent vesicle fusion events, thus, pre-synaptic activity. ISAD is based on MWA, which is a continuous wavelet transform based algorithm that employs multiple wavelets and is published as: Sokoll, S., Tönnies, K., and Heine, M. Detection...
    Downloads: 0 This Week
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  • 13
    The Self-Organizing Map Maker for Education and Research. Features include 3D-visualization of the training process, various 2D and 3D map topologies, easy extensibility to additional topologies.
    Downloads: 0 This Week
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  • 14
    Screening Assistant 2
    ScreeningAssistant 2 is a modular software dedicated to perform various simple and advanced chemoinformatics analysis around chemical libraries.
    Downloads: 0 This Week
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  • 15
    Spectra processing and analysis tools

    Spectra processing and analysis tools

    SpecTools - an OpenSource software package for quant. spectra analysis

    Automated Quantitative Spectroscopic Analysis Combining Background Subtraction, Cosmic-Ray Removal and Peak Fitting programmed in LabVIEW. Current version 1.1.0. Binaries and source available.
    Downloads: 3 This Week
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  • 16
    Burrow-owl is a software package for visualizing multidimensional nuclear magnetic resonance (NMR) spectra, with an emphasis on spectra used in macromolecular structure determination.
    Downloads: 0 This Week
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  • 17
    A GUI to calculate chemical compound characteristics along with their Neutron and X-Ray Scattering Length Densities. Comes as standalone package for Windows, Linux and MacOS (in the future).
    Downloads: 0 This Week
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  • 18
    A Library for Chemical Formula Parsing. Syntax only, no semantics. No external library dependencies, namespace std:: only. Uses UnitTest++ during development to ensure consistent behaviour.
    Downloads: 0 This Week
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  • 19
    DArmstadt MAgnetic Resonance Instrument Software
    Downloads: 0 This Week
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  • 20
    Simulator for transmission electron microscope images and tilt series of biological samples.
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    Downloads: 14 This Week
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  • 21
    A fast efficient way of dealing with large amounts of Blast or Repeatmasker data.
    Downloads: 0 This Week
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  • 22
    The Parenthesis Classifier takes the contents of a set of parentheses and classifies it into one of several categories. It includes a parenthesized-data extractor and the classifier.
    Downloads: 0 This Week
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  • 23
    Smoldyn is a computer program for simulating reactions and diffusion at a mesoscopic size scale. This scale lies between the more traditional microscopic size scale, in which all or most atoms are considered.
    Downloads: 0 This Week
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  • 24
    ToxOtis
    ToxOtis is a Java interface to the predictive toxicology services of OpenTox. ToxOtis is being developed to help both those who need a painless way to consume OpenTox web services and for ambitious service providers...
    Downloads: 0 This Week
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  • 25
    Protein Cavity Search
    Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.
    Downloads: 0 This Week
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