Showing 3 open source projects for "text database"

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  • 1
    GNAT

    GNAT

    GNAT recognizes gene names in text and maps them to NCBI Entrez Gene

    GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline.
    Downloads: 1 This Week
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  • 2

    yb Medical Dictionary User Customizable

    java8 based yb (creator's name) medical mini dictionary with text file

    ...The data text file and the classes ARE NOT TO BE COMMERCIALISED. User can go on adding his own words by using a text editor such as geany or gedit.
    Downloads: 0 This Week
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  • 3

    VarImpact

    Extracting effects of mutations on molecular properties from text.

    Genetic variants alter cellular behavior in a variety of ways, changing biochemical properties of DNA, mRNA, and proteins. Many large-scale sequencing projects are under way to detect human variation in health and disease. Although broad disease associations can be discovered by GWAS studies, the low-level impact of mutations is hardly available in structured form. The results of thousands of small-scale experiments, on the other hand, are present in the literature and discuss observations...
    Downloads: 0 This Week
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