Showing 41 open source projects for "console windows"

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  • 1

    BBMap

    BBMap short read aligner, and other bioinformatic tools.

    This package includes BBMap, a short read aligner, as well as various other bioinformatic tools. It is written in pure Java, can run on any platform, and has no dependencies other than Java being installed (compiled for Java 6 and higher). All tools are efficient and multithreaded. BBMap: Short read aligner for DNA and RNA-seq data. Capable of handling arbitrarily large genomes with millions of scaffolds. Handles Illumina, PacBio, 454, and other reads; very high sensitivity and...
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    Downloads: 601 This Week
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  • 2
    Biosignal Tools
    BioSig is a software library for processing of biomedical signals (EEG, ECG, etc.) with Matlab, Octave, C/C++ and Python. About 50 different data formats are supported.
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    Downloads: 136 This Week
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  • 3
    Monte Carlo eXtreme (MCX)

    Monte Carlo eXtreme (MCX)

    Physically accurate and validated GPU ray-tracer

    MCX is a GPU-accelerated, general-purpose, physically-accurate and feature-rich 3-D light transport simulator. It is one of the fastest simulators because it can use tens of thousands of GPU threads to simulate photons in parallel.
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    Downloads: 53 This Week
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  • 4
    OxyWitleaf2CSV

    OxyWitleaf2CSV

    Witleaf pulse oxymeter BIN format data decoder.

    The simple program is a Witleaf handheld pulse oxymeter BIN file format data decoder. It reads BIN-files produced by popular professional pulse oxymeters manufactured by Shenzhen Witleaf Medical Electronics Co., Ltd. (like the WIT-S300 shown in the photo on the project icon) and produces a CSV-formatted output with the extracted data to stdout (gets printed to the console if not directed otherwise). More info on https://github.com/mrKirushko/OxyWitleaf2CSV .
    Downloads: 1 This Week
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    R packages (maintained by YJLEE)

    R packages (maintained by YJLEE)

    R packages for PK/PD modeling , BE/BA, drug stability, ivivc, etc.

    These R packages are developed for data analysis of PK/PD modeling & simulation, bioequivalence/bioavailability (BE/BA), drug stability, in-vitro and in-vivo correlation (ivivc), as well as therapeutic drug monitoring (TDM).
    Downloads: 13 This Week
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  • 6

    Biochemistry

    Compares serum biochemistry parameters in selected animals

    Biochemistry compares your serum biochemistry parameters of animals with one's reference values (Kaneko et al, 2008) and can save laboratory card for tested parameters. Cat, dog, pig, cow and horse are included
    Downloads: 0 This Week
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  • 7

    Res Medicinae

    Applications for use in Medicine

    Res Medicinae is the attempt to overcome high pricing in the realm of medical information systems and to provide users with a stable, platform independent, extensive system using latest technology and being open to many other medical systems.
    Downloads: 0 This Week
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  • 8

    ICDtools

    Tools for ICD (International Classification of Diseases) data

    Currently implemented: Python parser to import ICD10 XML data into a relational PostgreSQL database Sponsored by Ordium Biotechnology https://ordium.ai MIT License
    Downloads: 0 This Week
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  • 9
    PPIXpress

    PPIXpress

    specific protein interaction networks from transcript expression

    Although protein-protein interaction networks are an ubiquitous component of modern systems biology, comparatively few efforts have been made to tailor their topology to the actual cellular condition under study. Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal...
    Downloads: 2 This Week
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  • 10
    Nifty Reg
    This project, initially developed at University College London, contains programs to perform rigid, affine and non-linear registration of nifti or analyse images. Two versions of the algorithms are included, a CPU- and a GPU- (using CUDA) based implementation.
    Downloads: 5 This Week
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  • 11
    EFO

    EFO

    The Experimental Factor Ontology describing experimental variables

    *** Please note this repository is now deprecated as of January 2018. All EFO development and source code has been moved to https://github.com/EBISPOT/efo *** The Experimental Factor Ontology (EFO) available from http://www.ebi.ac.uk/efo is an application focused ontology modeling the experimental factors in ArrayExpress and constructing mappings to multiple existing domain specific ontologies. To submit new terms, features or report bugs please submit a ticket at the following:...
    Downloads: 0 This Week
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  • 12
    Nifty Sim
    Nifty Sim is a high-performance nonlinear finite element solver, developed at University College London. A key feature is the option of GPU-based execution, which allows the solver to significantly out-perform equivalent commercial packages.
    Downloads: 0 This Week
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  • 13

    Fekke's BMI calculator

    C# BMI Calculator with wizzard.

    An application written in C#, which will assist you in calculating your Body Mass Index.
    Downloads: 0 This Week
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  • 14

    An ethernet sniffer for BrainNet36®

    An ethernet sniffer for the EEG acquisition system BrainNet36®

    This Ethernet sniffer was designed to work together with the medical device for EEG acquisition BrainNet36® (BNT36), from EMSA Equipamentos Médicos Ltda. BrainNet36® has 36 channels, A/D converters with 16 bit accuracy, conversion time of 10 µs and Ethernet communication interface. Being a device for clinical purposes, BrainNet36® does not export data online. This sniffer was developed to allow online processing by working in promiscuous mode and recording data in a plain text file.
    Downloads: 0 This Week
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  • 15

    CoVEC

    Consensus Variant Effect Classification

    The package provides SVM models to be used with SVMlight (http://svmlight.joachims.org/) for drawing a consensus out of individual 3rd-party predictions about the effect of mutations. The 3rd party tools are SIFT, Polyphen2, SNPs&GO and Mutation Assessor. The package also provides a series of Perl modules and scripts to assist in the preparation of data. The modules can be used to build custom tools and pipelines, whereas the scripts provide basic executable implementations based on the...
    Downloads: 0 This Week
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  • 16
    PACS VM

    PACS VM

    ISO - Customized version of dcm4chee 2.17.3 for MySQL.

    1. Add JBoss Application Server 4.2.3.GA for JDK 6. 2. Cleanup for Windows and deprecated files. 3. Off CONSOLE records - http://forums.dcm4che.org/jiveforums/thread.jspa?messageID=4787
    Downloads: 1 This Week
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  • 17
    Intelligent e-knowledge base engine for any kind of knowledge-based applications, supporting effective knowledge presentation, precise knowledge search, adaptive learning and immediate consulting.
    Downloads: 0 This Week
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  • 18
    Matlab tool for plotting multi-channel biomedical signals. It is designed for researchers on both engineering and medicine who have to collaborate to visualize and analyze signals. It is the ideal tool to plot electroencephalogram (EEG), Foetal Heart Rate (FHR) and many other signals with the standard tools used in clinical routine.
    Downloads: 0 This Week
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  • 19

    Ablator

    A tool for automating laser ablations for neuroscience

    Ablator is a suite of software that automates the microscopic detection of cell targets and also directs a 2-photon microscope to lesion these targets in arbitrary patterns for neuroscience research. See Hayes et al 2012 for an example of its usage (http://www.pnas.org/content/109/21/8286.abstract).
    Downloads: 0 This Week
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  • 20
    Xpose - an S/R based population PK/PD model building aid for NONMEM.
    Downloads: 0 This Week
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  • 21
    PROJECT MOVED: see http://www.vmtk.org for up-to-date information. Libraries and tools for 3D reconstruction, geometric analysis, mesh generation and surface data analysis in image-based blood vessel modeling.
    Downloads: 0 This Week
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  • 22
    Evaluation of Cardiac MR Segmentation
    An evaluation framework for assessing contours generated by segmentation algorithms acting on cardiac magnetic resonance (MR) images. These contours are important for clinical assessment of left ventricular volume and mass.
    Downloads: 0 This Week
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  • 23
    This is a research-level program used to track protein translocation in live cell imaging experiments when the nucleus is not specifically marked by either stain or transfected fluorescent proteins.
    Downloads: 0 This Week
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  • 24
    The BE-Calculator is a Java application, written to ease the average diabetic's life. It currently only calculates how many I.U. you have to inject, but aims at providing a full, multilingual diabetic's diary. This project has been superseded by GGC!
    Downloads: 0 This Week
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  • 25
    ConSole is an open and modular application for conducting real-time experiments developed at the University Konstanz. The modular approach makes it easy for developers to add new features to the software and setup their own Experiments.
    Downloads: 0 This Week
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