Showing 383 open source projects for "user mode linux"

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  • 1
    ECG Logger

    ECG Logger

    ECG Logger is a complete Holter system incl. device and firmware.

    NEW V3 version with RTC and buzzer (require V3+ ECG Logger Viewer application) The ECG Logger project is a Wearable Cardio Monitor for Long-Term (up to 24h) ECG Data Acquisition and Analysis (aka Holter) with an ECG live (real-time) mode. This project provides a very low-cost open-source "Hardware and Software" for a Cardiac Rhythmic Holter. The hardware has been made very simple and is based on an Arduino Nano micro-controller with boards for SD card mass-storage, instrumentation...
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  • 2

    MAGeCK

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout

    Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at Children's National Medical Center. We thank the support...
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    Downloads: 147 This Week
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  • 3
    hr ("High Resolution") is a small command-line utility to calculate possible elemental compositions for a given mass. It allows to run calculations interactively, in batch mode, via the command line, or (using a webserver) via a web interface.
    Downloads: 0 This Week
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  • 4
    bruread is a program to read and display NMR data in the Bruker XWIN-NMR format. The program has a command-line interface and a graphic display based on gnuplot. - Note that this is only an NMR spectrum *viewer*, not a full-fledged data evaluation suite
    Downloads: 0 This Week
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  • 5

    dualword-rt

    measuring bimanual simple visual reaction time

    measuring bimanual simple visual reaction time Source code: http://github.com/dualword/dualword-rt
    Downloads: 0 This Week
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  • 6
    SimPET

    SimPET

    A web platform for the MC simulation of realistic brain PET data

    SimPET (http://www.sim-pet.org) is an open, efficient, and user‐friendly online platform for the generation of synthetic brain PET datasets. The platform offers the ability to generate realistic activity and attenuation maps from patient's PET/CT and MRI images. These maps can then be simulated, and sinograms and simulated images can be downloaded. More advanced features can be obtained by using the SimPET scripts: https://github.com/txusser/brainviset_simset https://github.com...
    Downloads: 0 This Week
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  • 7
    medical image analysis

    medical image analysis

    Libraries and command line tools for medical image processing.

    This software provides libraries and command line tools for the processing and analysis of gray scale medical images.
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    Downloads: 18 This Week
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  • 8
    dsam
    The Development System for Auditory Modelling (DSAM) is a computational library designed specifically for producing simulations of the auditory system. It brings together many established auditory models within a flexible programming platform.
    Downloads: 3 This Week
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  • 9
    The new version of MinimPy (MinimPy2) is available for download at: https://osdn.net/dl/minimpy2/MinimPy2.zip Please send your feedback about this new version to mahmood.saghaei@gmail.com (include MinimPy2 in the subject) ============================================================ MinimPy is a desktop application program for sequential allocation of subjects to treatment groups in clinical trials by using the method of minimization. Comprehensive reference help is available at...
    Downloads: 24 This Week
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  • 10
    HL7 Inspector

    HL7 Inspector

    HL7 Inspector is a tool for managing HL7 messages

    The HL7 Inspector project has moved to Bitbucket. https://bitbucket.org/crambow/hl7inspector All new releases can be found there. The web-based version can still be found at www.hl7inspector.com
    Downloads: 7 This Week
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  • 11

    KINRED

    Integrator for hardware and software

    Kinred is an open source hardware and software integrator, created by professionals for professional students.
    Downloads: 0 This Week
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  • 12

    DICOM Confidential

    An open source Java DICOM de-identification toolkit

    DICOM Confidential project develops an open source DICOM (Digital Imaging and Communications in Medicine) de-identification toolkit that provides the necessary flexibility to account for different de-identification requirements.
    Downloads: 0 This Week
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  • 13
    Pydicom by examples

    Pydicom by examples

    Basic and intermediate examples of DICOM library with Jupyter

    Basic and intermediate examples to read, modify and write DICOM files with Python code using Jupyter - To install Jupyter - https://jupyter.org/install ====== All examples are based on Pydicom. An open source library - https://pydicom.github.io/
    Downloads: 0 This Week
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  • 14
    NUT Nutrition Software

    NUT Nutrition Software

    nutrition software to record and analyze what you eat

    nut is nutrition software to record what you eat and analyze your meals for nutrient composition. The emphasis is on personal dietary experimentation to determine the best possible diet. The software uses SQLite for a portable, os-independent application.
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    Downloads: 9 This Week
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  • 15
    TIES

    TIES

    A smart search engine for medical documents

    TIES (Text Information Extraction System) is a clinical text search engine that uses Natural Language Processing techniques to extract medical concepts from free text clinical reports. It provides secure de-identified access to this information and has in built collaboration tools and honest broker functionality. It is licensed for academic use under the BSD license. For commercial use please contact Nexi at http://nexihub.com *** NOTICE: this software and forum are no longer...
    Downloads: 2 This Week
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  • 16

    infix2pharmml

    Converter between mathematical infix notation and PharmML math markup.

    PharmML is a markup for pharmacometrics markup language documented at http://pharmml.org/. This project provides a converter between the conventional mathematical infix notation and the math markup used by PharmML. The online version has been disabled. Please download for offline use.
    Downloads: 0 This Week
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  • 17
    medSLT - The Medical Speech Translator
    Downloads: 0 This Week
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  • 18
    DICOM Image Reader

    DICOM Image Reader

    A minimal Medical application to read and view DICOM (dcm) image file

    Dicom Image Reader is opensource medical image viewer built with JavaScript, HTML5, NodeJS and Electron framework. It can load data in DICOM format (single image dcm) and provides standard tools for its manipulation such as contrast, zoom, drag, possibility to draw regions on top of the image and imaging filters such as threshold and sharpening. It is based DWV JavaScript opensource library. =============== Requirements: - Processor: Intel Pentium 4 processor or later that's SSE2...
    Downloads: 25 This Week
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  • 19
    MOSGWA

    MOSGWA

    genome wide association studies / Bayesian-type information criteria

    MOSGWA is a tool for genome wide association studies (GWAS). It currently implements a search strategy using logistic regression and linear regression.
    Downloads: 0 This Week
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  • 20
    As of 2018-06-28, this project has moved to https://github.com/AdamaJava. This copy of the code will remain but all new code updates and releases will be from the new site. Java code developed by the Australian ICGC team for operating on next-generation sequencing data. This code is currently being maintained and expanded by the QIMR Berghofer Genome Informatics team (http://www.qimrberghofer.edu.au/lab/genome-informatics/) More details and documentation can be found on the...
    Downloads: 0 This Week
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  • 21
    Vital Sign Simulator

    Vital Sign Simulator

    Patient vital sign simulator for medical emergency training purposes

    The vital sign simulator simulates a patient monitor and is intended for use in medical emergency training simulations. In combination with a (cheap) cpr-manikin, it offers a low-cost alternative to commercial high-tech patient simulation manikins. It is used with a dual monitor system, one monitor with controls for the operator and one providing the vital signs to the trainees. Heart rate, oxygen saturation, etCO2, respiratory rate, blood pressure and various moving ecg-samples can be set...
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    Downloads: 52 This Week
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  • 22
    MatNMR is a highly flexible toolbox for processing 1D and 2D NMR/EPR spectra in MATLAB and creating high-quality 1D, 2D or 3D plots. Fully GUI and/or script-based.
    Downloads: 7 This Week
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  • 23
    SleepyHead

    SleepyHead

    Open Source CPAP Research and Review Software

    Open-source, cross platform, sleep tracking software with a focus on monitoring CPAP treatment. Please see http://sleepyhead.jedimark.net for official release information and latest downloads.
    Downloads: 4 This Week
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  • 24

    QMinim

    A web-based minimisation service

    Based on MinimPy (http://sourceforge.net/projects/minimpy/), QMinim is a web-based minimization application, for allocation of subject to different arms of a clinical trial. It is an alternative to randomization, with the advantage of balancing arms of trial with respect to preselected prognostic factors. All aspects of minimization procedure including treatments, factors, minimization protocole, and including a preload can be customized using QMinim.
    Downloads: 0 This Week
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  • 25

    BEMoDA

    Dissolution profile comparison Model Dependent-Independent Approach

    Dissolution profile comparison (Biowaiver aid) Model Dependent-Independent Approach scripts for in-vitro dissolution profile comparison as proposed by Sathe et al. in 1996 (Sathe PM, Tsong Y, Shah VP. In-vitro dissolution profile comparison: statistics and analysis, model dependent approach. Pharm Res. 1996 Dec;13(12):1799-803) and Tsong et al. in 1996 (Tsong Y, Hammerstrom T, Sathe P, Shah VP. (1996) Statistical Assessment of Mean Differences between Two Dissolution Data Sets, Drug Info. J....
    Downloads: 0 This Week
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