Search Results for "alpha"
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Showing 174 open source projects for "alpha"
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A Matlab/Octave toolbox to design, simulate, and analyze optical communication systems. Open-source, fast, user-friendly, and customizable, it includes cutting-edge solutions for modulation formats generation, performance estimation, optical fiber propagation. See more at https://optilux.sourceforge.io.
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RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
| RAFTS3G - Rapid Alignment Free Tool for Sequences Similarity Search to Groups| % Clustering algoritm to create homology clusters based on RAFTS3 (VIALLE, R. A.) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. Alcides Vieira Arco-verde street, 1225 % CEP: 81520-260 Jardim das Américas % ... -
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Virtual Reflectometer
Simulates basic reflectometer scans with X ray tracing.
With Virtual Reflectometer (VR), you can simulate the basic alignment scans of a basic X ray reflectometer (diffractometer) with a Goebel mirror using ray tracing. With this program, you can characterize reflectometers and get a reflectometer-dependent overillumination correction for X Ray Reflectivity (XRR) scans. The pogram serves as an educational tool for explaining alignment and for a proper overillumination correction of XRR data. !!Paper will be referenced!!. VR can be run by... -
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adcptools
Set of functions to process acoustic Doppler current profiler data
adcptools is a set of Matlab functions to post-process acoustic Doppler current profiler data. It consists of several low-level function to read out data files and several functions to process data from repeat transect measurements, moored turbulence measurements and horizontal ADCP deployments. -
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PsyExTool
psychophysical experiment control, data collection and visualization
PsyExTool is a Psychophysical Experiment Toolbox in Matlab/Octave dedicated to control experiment, collect and visualize data. PsyExTool is aimed to create a tool that enables to couple the methods with visual or audio stimulus presentation modules. At present the program allows to use adjustment, constant stimulus and adaptive PSI psychophysical methods. The parameters of the stimulus and psychophysical method is adjusted in a single graphical user interface. The responses are collected... -
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The main goal of this project is to develop new algorithms of machine learning and collect examples of existing methods. This collection pursues scientific and educational purposes.
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MolDynSim
TrajLab subproject: Molecular dynamics simulations in MATLAB
...AMBER, GROMACS, NAMD, etc.), the MATLAB environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in research and teaching! Started early 2010, MolDynSim is still in an early (alpha) stage, and any help in further development is highly appreciated. Developed mainly by B. Schmidt (FUB) -
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MetaStable
TrajLab subproject: Metastability analysis of molecular conformations
...AMBER, GROMACS, NAMD, etc.), the MATLAB environment offers easy access to manipulating the codes, testing novel algorithms, non-standard force fields and performing all kinds of numerical experiments. To be used mainly in research and teaching! Started early 2010, MetaStable is still in an early (alpha) stage, and any help in further development is highly appreciated. Developed by B. Schmidt (FUB), F. Haack, S. Röblitz, and M. Weber (ZIB) -
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Clustering by Shared Subspaces
Grouping Points by Shared Subspaces for Effective Subspace Clustering
These functions implement a subspace clustering algorithm, proposed by Ye Zhu, Kai Ming Ting, and Mark J. Carman: "Grouping Points by Shared Subspaces for Effective Subspace Clustering", Published in Pattern Recognition Journal at https://doi.org/10.1016/j.patcog.2018.05.027 -
MongoDB Atlas runs apps anywhereMongoDB Atlas gives you the freedom to build and run modern applications anywhere—across AWS, Azure, and Google Cloud. With global availability in over 115 regions, Atlas lets you deploy close to your users, meet compliance needs, and scale with confidence across any geography.
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Dynamic Linkage
Dynamic Linkage Social Aggregation Model
This project will create a user-friendly modeling system for studying animal social aggregations. The model codifies the a new hypothesis that the animal's state, kinematics, and the group's emergent properties are dynamically linked together, with each one affecting the others. The model will be constructed using Object-Oriented MatLab. -
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Brain imaging software produced by the Brain Research Imaging Centre of The University of Edinburgh.
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This project aims to develop and share fast frequent subgraph mining and graph learning algorithms. Currently we release the frequent subgraph mining package FFSM and later we will include new functions for graph regression and classification package
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Qu is a MATLAB toolbox for the visualization and analysis of N-dimensional datasets targeted to the field of biomedical imaging. It supports several microscopy image formats and offers a plugin mechanism and a consistent API for easy extension.
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ISS SPHERES
SPHERES Facility software for scientists
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CoRoPa stands for Computational Rough Paths. The aim of CoRoPa is to provide a software framework for various ideas related to Rough Path Theory, including rough differential equations and the digital description of serial data streams.
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SCALEXTRIC_CONTROLLER
An open source controller for Scalextric community
Open source controller for Scalextric community. Scalextric Controller is composed by a custom hand controller, used to drive the Scalextric slots cars, and Android application used to communicate with the hand controller via Bluethoot low power (BLE). This project repository contains the PCB project, the micro embedded software, the Android App and the 3D CAD design of the cricital mechanical parts. -
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A Matlab software routine to perform Principal Component Analysis using Covariance, Correlation or Comedian as the criterion. Though, initially developed for experiments related to fretting wear but can be effectively used to interpret experimental data from any field. The attached files contain source code as well as a sample MATLAB (.mat) data file of 13 variables. It could be replaced to the data file of your choice. The code is open source but you are requested to give credits if used....
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AKtoolbox
Matlab Toolbox for coevolution analysis of multiple sequence alignment
AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus... -
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GDS2HFSS is a circuit design utility to convert 2-dimensional layout file in GDS stream format into a 3-dimensional structure in electromagnetic (EM) simulator - ANSYS High Frequency Structure Simulator (HFSS).
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PALM
Probabilistic natural mapping for gene based association study.
PALM is a software that conducts gene-based association analysis. PALM exploits Hidden Markov Models (HMM) to capture the inner genomic structures. Then, unique gene features (termed "palm prints") are extracted for each gene set by calculating the natural gradient. Then palm-prints are tested with chi-square significance test. -
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GPMfit
Gaussian Process Model Fitting
Gaussian Process model for fitting deterministic simulator output. Establish efficient and reliable likelihood optimization through hybridized DIRECT-BFGS and multi-start BFGS algorithms. Programming Language: Matlab. -
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lpACLib
An Open-Source Library for Low-Power Approximate Computing Modules
The “lpACLib” library contains the VHDL description of accurate and approximate versions of several arithmetic modules (like adders and multiplier of different bit-widths) and accelerators. Moreover, it also provides the corresponding software behavioral models/implementations developed in C and MATLAB to enable quality characterization. Besides our novel designs, it also contains implementations for several state-of-the-art arithmetic modules and their approximate versions. This open-source... -
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This project houses software to analyze data acquired from electrophysiology experiments. Currently, we have an Octave/MATLAB program to analyze electroneurogram traces of coupled oscillators, and a Perl library for the analysis of voltage trace data
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SILA
Automated bacterial and archaeal genome annotation system
...It provides accurate gene prediction using a combination of tools (Prodigal and HGF) and a web site for task management and visualization of annotation. This project is in alpha stage. Please use the online service available at: http://www.bioinfo.ufpr.br/SILA/login.jsp Documentation (portuguese only): http://hdl.handle.net/1884/34801 -
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MetaOpen
Metabolomics Bioinformatics Tools
Our bioanalytical research exploits practical and efficient high-throughput technologies for the analyses of complex mixtures derived from living systems. This will facilitate the development of preventive, predictive and personalized medicine for specific diseases and will promote health and wellness. We use a number of high-throughput analytical platforms including multidimensional liquid chromatography-mass spectrometry (MDLC-MS) for proteomics, and for metabolomics; liquid...
