Search Results for "alignment"
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Showing 10 open source projects for "alignment"
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CBIG
Computational Brain Imaging Group tools
CBIG is a comprehensive toolkit maintained by Thomas Yeo’s Computational Brain Imaging Group containing tools for processing and analyzing neuroimaging data—including fMRI preprocessing pipelines, brain parcellation algorithms, mental disorder subtyping models, fMRI dynamic models, registrations between brain spaces, and phenotypic prediction algorithms. After cloning/downloading this repository, please see README inside setup directory to see instructions on how to set up your local... -
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RAFTS³G
Rapid Alignment Free Tool for Sequences Similarity Search to Groups
| RAFTS3G - Rapid Alignment Free Tool for Sequences Similarity Search to Groups| % Clustering algoritm to create homology clusters based on RAFTS3 (VIALLE, R. A.) % More informations about RAFTS3 in: https://sourceforge.net/projects/rafts3/ % Professional and Technical Education Sector from the Federal University of Paraná - Bioinformatic Lab. % Federal of Paraná University - UFPR % Dr. -
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MTCNN Face Detection Alignment
Joint Face Detection and Alignment
MTCNN_face_detection_alignment is an implementation of the “Joint Face Detection and Alignment using Multi-task Cascaded Convolutional Networks” algorithm. The algorithm uses a cascade of three convolutional networks (P-Net, R-Net, O-Net) to jointly detect faces (bounding boxes) and align facial landmarks in a coarse-to-fine manner, leveraging multi-task learning. Non-maximum suppression and bounding box regression at each stage. -
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Virtual Reflectometer
Simulates basic reflectometer scans with X ray tracing.
With Virtual Reflectometer (VR), you can simulate the basic alignment scans of a basic X ray reflectometer (diffractometer) with a Goebel mirror using ray tracing. With this program, you can characterize reflectometers and get a reflectometer-dependent overillumination correction for X Ray Reflectivity (XRR) scans. The pogram serves as an educational tool for explaining alignment and for a proper overillumination correction of XRR data. !! -
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An alignment-free standalone tool with interactive graphical user interface for DNA sequence comparison and analysis
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AKtoolbox
Matlab Toolbox for coevolution analysis of multiple sequence alignment
AK Toolbox is a Matlab Toolbox for co-evolution analysis for protein Multiple Sequence Alignment (MSA) distributed under Simplified BSD License. The aim of AK toolbox is to provide a set of Matlab functions, which are independent of Matlab Bioinforamtics Toolbox, for coevolution anaylsis for MSA. At present, co-evolution methods available in this package are Statistical Coupling Analysis (SCA), Explicit Likelihood of Subset Covariance (ELSC), Mutual Information (MI), Observed Minus Expected Square method (OMES), McLanhlan Based Substitution Correlation (MCBASC), Direct-coupling analysis (DCA) and logR. ... -
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RAFTS3
Rapid Alignment Free Tool for Sequences Similarity Search
RAFTS3 can perform high-speed protein search comparisons locally using a desktop computer or laptop. RAFTS3 performed searches many times faster than those with BLASTp against large protein databases such as NR and Pfam, with a small loss of sensitivity depending on the similarity degree of the sequences. RAFTS3 is a new alternative for fast comparison of protein sequences, genome annotation and biological data mining. Preprint: http://dx.doi.org/10.1101/055269 Precomputed databases... -
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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Optical ray tracing library based on MATLAB environment Now working on the simple raytracing simulation. Documents are not ready yet. NEW UPDATE : ray generation function, other bug fix and multiple ray treatment
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im-browser
MIB is a high-performance software package for image segmentation
Microscopy Image Browser (MIB) is a high-performance software package for advanced image processing, segmentation and visualization of multi-dimensional (2D-4D) light and electron microscopy datasets. Home page: http://mib.helsinki.fi
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