Search Results for "gnu/linux" - Page 16
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Showing 821 open source projects for "gnu/linux"
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Flexible Brain Graph Visualizer
Matlab code to visualise brain graphs from connectivity matrices
This very configurable script allows you to plot a 3D (MNI space) visualisation of a brain graph, with edges represented by cylinders and vertices represented by spheres. To aid orientation, a cortical mesh can be added, as can convex hull outlines. The colouring and sizing scheme is fully configurable for both edges and vertices. You can see some example output in... -
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nail_systems_biology
NAIL is a toolset for network analysis in the life sciences
The NAIL (Network Analysis and Inference Library) project is a set of tools for solving problems in the life sciences using network (graph) approaches. NAIL includes methods for creating networks, analysing and comparing networks, and for visualising or presenting the results. These methods are designed as self-contained platform-independent components which can be called either from another program, or from a command line. Modelling biological systems as networks (graphs) is becoming a... -
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CS Miner
A tool for Navigating in Chemical Space
CS-Miner stands for Chemical Space Miner and is a software tool for navigating in chemical space of compound databases. It helps for deriving appropriate classification models and performing virtual screening. Download it via: http://csminer.com/csm/?p=7 A quick tutorial is available through: http://csminer.com/csm/?p=8 -
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matGeom
Library for 2D/3D geometry in Matlab.
Geometry library for Matlab in 2D and 3D. Contains function for creation and manipulation of basic shapes, computing intersections, transformation, display... The project is being moved to GitHub: http://github.com/dlegland/matGeom -
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Functional Mechanism
Regression Analysis under Differential Privacy
Functional Mechanism is a differentially private method designed for a large class of optimization-based analyses. The main idea is to enforce epsilon-differential privacy by perturbing the objective function of the optimization problem, rather than its results. Please cite the following paper if you choose to use this code: J. Zhang, Z. Zhang, X. Xiao, Y. Yang, and M. Winslett. Functional Mechanism: Regression Analysis under Differential Privacy. PVLDB 5(11):1364-1375, 2012. -
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svmradiusmargin
code for convex formulation of radius-margin based SVM
Matlab code for the novel algorithms presented in the paper Convex formulation for radius-margin based Support Vector Machines -
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Open Source Implementations for 3D-Surface Characterisation Algorithms according to ISO 25178 (Geometric Product Specification) in verifiable pseudocode (MATLAB). Implementation of an XML-based file exchange format according to upcoming ISO 25178-72.
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matImage
An image processing and analysis library for Matlab
MatImage is a Matlab library for image processing and analysis in 2D and 3D. It contains more than 250 fonctions for image enhancement, filtering, analysis, or visualisation, as well as for creating basic test shapes. It is built as a complement of the Mathworks image processing toolbox (IPT). Project is being transfered to GitHub: http://github.com/dlegland/matImage -
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MatrixUser
A Multi-functional GUI-based Program for Image Processing and Analysis
The MatrixUser project is moving to GitHub, the latest version can be obtained from https://leoliuf.github.io/MatrixUser/ Most of the medical images (e.g. CT, MRI, PET, etc.) comprises multiple frames which represent slices, phases, timing etc. from the same imaging object. Those images can be saved as multidimensional matrices in Matlab thanks to Matlab's powerful support of multidimensional data representation. However, within Matlab, most of image manipulation functions are limited or... -
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Scorpius Robocup soccer simulation team. we will release our binaries, base code, trainers and useful documents here.
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compariSong is an audio tool to support query by singing/humming. It compares a database of popular songs with a hummed-by-user melody and returns the closest matches.
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OpenTLD
OpenTLD is an open source library for real-time 2D tracking
OpenTLD is an open source implementation of the TLD (Tracking-Learning-Detection) framework, designed for real-time 2D tracking of a single object in video sequences. Because it fuses tracking and detection, TLD can recover from occlusions, drift, or failures by using its detection mechanism to reacquire the object. In terms of usage, one typically initializes the tracker by providing a bounding box on the first frame, then calls a function like run_TLD to process a video and obtain bounding... -
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Rcnn
R-CNN: Regions with Convolutional Neural Network Features
This repository contains the original MATLAB implementation of R-CNN (Regions with Convolutional Neural Networks), a pioneering deep learning-based object detection framework. Developed by Ross Girshick, R-CNN combines region proposals with convolutional neural networks to detect objects in images. It was one of the first approaches to significantly improve performance on object detection benchmarks like PASCAL VOC. -
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FrancescoMontorsi ScientificResearch
Scientific research work of Francesco Montorsi,Univ. of Modena, Italy
This project hosts the code and the documents which were created by Francesco Montorsi during his PhD at the University of Modena and Reggio Emilia, Italy, about indoor and outdoor localization and navigation techniques. The code (mostly MATLAB code) is publicly available to enable reproducible research. -
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The EasyDIAg toolbox allows the calculation of inter-rater agreement timed-event sequential data taking into account errors of commission and ommision.
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SuperpixelMethod
Implementation of phase and amplitude modulation methods for the DMD
This is a tool set for controlling digital micromirror devices for creating digital holograms and general optical field patterns. Hardware requirements include a laser and a DMD development board. A description of the use of the software in digital holography can be found here: http://cops.nano-cops.com/publications/superpixel-based-spatial-amplitude-and-phase-modulation-using-digital-micromirror-devic This software was developed with support from ERC and FOM. -
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mcompartments
A Matlab/GNU Octave package for dynamic box models
A Matlab/GNU Octave package for dynamic box models with any number of species and compartments. Box models are useful to study the dynamics of chemicals within systems that can be described by different compartments (e.g. environmental systems). -
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PrivLocal/PrivGene
Differentially Private Model Fitting Using Genetic Algorithms
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METAlab GTG
Matlab toolbox to run a GLM on graph theoretic properties in MRI data
This Matlab toolbox runs a GLM on graph theoretic network properties in brain networks. The GLM accepts continuous & categorical between-participant predictors and categorical within-participant predictors. Significance is determined via non-parametric permutation tests. The toolbox allows testing of both fully connected and thresholded networks (based on a range of thresholds). The toolbox also provides a data processing path for resting state fMRI data. Several options for partialing... -
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PRIN-3D (PRoto-code for Internal flows modeled by Navier-Stokes equations in 3-Dimensions) is a CFD code written in MATLAB, with turbulent and reactive capabilities.
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gnumex
Compile matlab mex files with gcc on Windows Platforms
Gnumex is a package that allows Matlab mex and engine files written in C, C++, Fortran 77 or Fortran 95 to be compiled with MinGW (or Cygwin) MS Windows versions of gcc, gfortran or g95. NOTE: Newer versions of Matlab now natively support Mingw, negating the need for this package. -
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Kernel Adaptive Filtering Toolbox
a Matlab benchmarking toolbox for kernel adaptive filtering
[Note: This project has moved. Visit https://github.com/steven2358/kafbox/ for the latest version.] A Matlab benchmarking toolbox for kernel adaptive filtering. Kernel adaptive filtering algorithms are online and adaptive regression algorithms based on kernels. They are suitable for nonlinear filtering, prediction, tracking and nonlinear regression in general. This toolbox includes algorithms, demos, and tools to compare their performance. See the included README file for a list of... -
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MIST
A MATLAB toolbox to simulate optical systems
Modal Interferometer Simulation Tool (MIST) is a MATLAB toolbox that can simulate arbitrary resonant optical systems in the paraxial beam approximation. It allows the user to define any optical setup (composed typically of laser sources, mirrors, lenses, electro-optical modulators and detectors) and to compute the static laser field at any point. It uses a Hermite-Gauss modal decomposition to simulate diffraction limited optics. This tool is being developed mainly for simulation of large... -
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Elastic network models (ENMs) have been shown to generate the dominant functional equilibrium motions of biomolecules quickly and efficiently. MAVEN simplifies ENM generation, allows for diverse models to be used, and facilitates useful analyses.
