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Manim is a Python library and animation engine designed for creating precise, programmatic mathematical visuals—famously used by 3Blue1Brown. It enables developers and educators to script animations using code and produce high-quality explanatory math videos.

...Minsky is good for demonstrating mathematics too, with the most "math-like" interface in system dynamics. Sign up to Minsky's Patreon page (for as little as $1 a month) at https://www.patreon.com/Ravelation/. This creates a user community, which SourceForge doesn't facilitate.

MAGeCK2 is here: https://github.com/davidliwei/mageck2 Model-based Analysis of Genome-wide CRISPR-Cas9 Knockout (MAGeCK) is a computational tool to identify important genes from the recent genome-scale CRISPR-Cas9 knockout screens technology. For instructions and documentations, please refer to the wiki page. MAGeCK is developed by Wei Li and Han Xu from Dr. Xiaole Shirley Liu's lab at Dana-Farber Cancer Institute/Harvard School of Public Health, and is maintained by Wei Li lab at...

Etchimaths is a Mathematics software, a helping tool for Mathematics simulation(solving) and study.It is a solving as well as a teaching software. It involves Mathematics programs at various levels of studies;they include: 1.Etchimaths(O'LEVEL) 2.Etchimaths(A'LEVEL) 3.Etchimaths(UNIVERSITY) 4.Etchimaths(BEPC/BEPC+1) 5.Etchimaths(BAC) 6.Etchimaths(UNIVERSITE) 7.Etchimaths(ULTIMATE) and more to come in future..

Etchimaths(A'LEVEL) is a Mathematics software, a helping tool for Mathematics simulation(solving) and study for the GCE ADVANCED LEVEL standard.It is a solving machine as well as a teaching machine

AUTO is a publicly available software for continuation and bifurcation problems in ordinary differential equations originally written in 1980 and widely used in the dynamical systems community.