Open Source Linux Machine Learning Software - Page 14
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Machine Learning Software for Linux
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Open Pandora's Box
Pandora is an artificial intelligent web based bot
Pandora is an artificial intelligent web based bot written in Java. Pandora is a component based AI architecture including, database memory, XML, voice, voice rec, chat, IRC, HTTP, Wiktionary, Freebase, consciousness, language, GUI, applet, web, jsp, Android -
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The Python Computer Vision Framework is an opened project deisgned for all those interested in computer vision. It aims at making computer vision more easy and structured and matlab-free. It may also be used for other artistic and scientific areas.
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The AK toolkit is another kit for building and use Hidden Markov Models (HMMs). Originally developed for handwritten text recognition (HTR) using Bernoulli HMMs, it also implements diagonal Gaussians and can be used for any other purpose.
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ANNFiD
A forensic file identification tool using neural networks
Just carved a bunch of bytes and have no idea what they could be? Maybe ANNFiD can help. ANNFiD uses neural network to identify byte patterns. It can be trained and has a GUI to help in the process. The tool is still on a very early stage, but could improve exponentially with the help of the developer community -
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Botnet Detectors Comparer
Compares botnet detection methods
Compares botnet detection methods by computing the error metrics by reading the labels on a NetFlow file. The original NetFlow should have a new column for the ground-truth label, and a new column with the prediction label for each botnet detection method. This program computes all the error metrics (TPR, TNR, FPR, FNR, Precision, Accuracy, ErrorRate, FMeasure1, FMeasure2, FMeasure0.5) and output the comparison results. It also ouputs a png plot. The program can compare in a flow-by-flow basis, or it can apply our new botnet detection error metrics, that is time-based, detects IP addresses instead of flows and it is weighted to favor sooner detections. See the paper for more details. -
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BreakDancer-0.0.1 is a Perl package that provides genome-wide detection of structural variants from next generation paired-end sequencing reads.
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DE-HEoC
DE-based Weight Optimisation for Heterogeneous Ensemble
We propose the use of Differential Evolution algorithm for the weight adjustment of base classifiers used in weighted voting heterogeneous ensemble of classifier. Average Matthews Correlation Coefficient (MCC) score, calculated over 10-fold cross-validation, has been used as the measure of quality of an ensemble. DE/rand/1/bin algorithm has been utilised to maximize the average MCC score calculated using 10-fold cross-validation on training dataset. The voting weights of base classifiers are optimized for the heterogeneous ensemble of classifiers aiming to attain better generalization performances on testing datasets. -
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DOGMA is a MATLAB toolbox for discriminative online learning. It implements all the state of the art algorithms in a unique and simple framework. Examples are Perceptron, Passive-Aggresive, ALMA, NORMA, SILK, Projectron, RBP, Banditron, etc.
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GNAT
GNAT recognizes gene names in text and maps them to NCBI Entrez Gene
GNAT is a BioNLP/text mining tool to recognize and identify gene/protein names in natural language text. It will detect mentions of genes in text, such as PubMed/Medline abstracts, and disambiguate them to remove false positives and map them to the correct entry in the NCBI Entrez Gene database by gene ID. March 2017: We started to upload GNAT output on Medline. See files/results/medline/. -
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GPU Machine Learning Library. This library aims to provide machine learning researchers and practitioners with a high performance library by taking advantage of the GPU enormous computational power. The library is developed in C++ and CUDA.
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JaCHMM
Java Conditioned Hidden Markov Model library
The JaCHMM - the Java Conditioned Hidden Markov Model library - is a complete implementation of a CHMM in Java ready to use either on command line or as a module. The JaCHMM is licenced under the BSD licence. It gives an implementation of the Viterbi, Forward-Backward, Baum-Welch and K-Means algorithms, all adapted for the CHMM. JaCHMM is based on the JaHMM and also designed to achieve reasonable performance without making the code unreadable. Consequently, it offers a good way of applying the Conditioned Hidden Markov Model in various tasks, e.g., for scientific or teaching purposes. -
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Java Library for Machine Learning
A pure Java library for machine learning
JML is a machine learning library in Java, it is a pure Java package, and thus is cross-platform. The goal of JML is to make machine learning methods very easy to use and speed up code conversion from MATLAB to Java. Please be noted that JML has been replaced by LAML. -
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LAML:Linear Algebra and Machine Learning
A stand-alone Java library for linear algebra and machine learning
LAML is a stand-alone pure Java library for linear algebra and machine learning. The goal is to build efficient and easy-to-use linear algebra and machine learning libraries. The reason why linear algebra and machine learning are built together is that full control of the basic data structures for matrices and vectors is required to have fast implementation for machine learning methods. Additionally, LAML provides a lot of commonly used matrix functions in the same signature to MATLAB, thus can also be used to manually convert MATLAB code to Java code. -
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MACSY
Modular Architecture for Cognitive Systems
Macsy is a framework for developing modular agents. Data is organised in blackboards. Computations are performed by modules that annotate the data in the blackboards. Modules communicate indirectly through the annotations that they leave in the blackboards. The framework enables the development of decentralised software agents for a plethora of applications. -
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The Mars Rover Simulator project is based on the evolutionary robotics paradigm where an artificial agent acquires its skills through the process of artificial evolution. This simulator can be useful to evolve neural network controllers for the rover
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This is a RapidMiner extension replacing the current Weka-Plugin with the updated 3.7.3 Weka-Version. This is basically a branch of the 3.7.3 Version of WEKA wrapped into the old extension. New Features Include: -All the Features of the 3.7.3 Weka Package -Multi-Threaded ensemble learning -An enhancement on the popular RandomForest Learner based on "Dynamic Integration with Random Forests" by Tsymbal et al. 2006 and "Improving Random Forests" by Robnik-Sikonja 2004. -More enhancements to the voting mechanisms in Random Forest -Possibility to output Feature Weights according to the original Breiman Paper 2001
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NN Image Recognition (with source-code)
This is ANN trained application to predict digits from 0 - 9.
It can predict digits from 0-9 with Artificial Neural Network. I trained ANN with 100 samples of each digit. It takes input of 20x20 pixel image and predicts it with Neural Network. It may predict wrong digit due to very low sample data but it work 90% correctly. Note: JRE 1.6 is required to run this application. -
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Nen
neural network implementation in java
3-layer neural network for regression and classification with sigmoid activation function and command line interface similar to LibSVM. Quick Start: "java -jar nen.jar" -
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SPAWNN
SPatial Analysis With self-organizing Neural Networks
The SPAWNN toolkit is an innovative toolkit for spatial analysis with self-organizing neural networks which is particularily useful for spatial analysis, visualization and geographical data mining. To run the toolkit, simply download and execute (double-click) the jar-file. Please cite: - Hagenauer, J., & Helbich, M. (2016). SPAWNN: A Toolkit for SPatial Analysis With Self-Organizing Neural Networks. Transactions in GIS, 20(5), 755-775. Other related publications: - Hagenauer, J. (2016). Weighted merge context for clustering and quantizing spatial data with self-organizing neural networks. Journal of Geographical Systems, 18(1), 1-15. - Hagenauer, J., & Helbich, M. (2013). Contextual neural gas for spatial clustering and analysis. International Journal of Geographical Information Science, 27(2), 251-266. -
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TrimGA is a lightweight genetic algorithm library written in pure Java 6.0 that can be quickly applied to most optimization problems.
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Ubix Linux
The Pocket Datalab
Ubix stands for Universal Business Intelligence Computing System. Ubix Linux is an open-source, Debian-based Linux distribution geared towards data acquisition, transformation, analysis and presentation. Ubix Linux purpose is to offer a tiny but versatile datalab. Ubix Linux is easily accessible, resource-efficient and completely portable on a simple USB key. Ubix Linux is a perfect toolset for learning data analysis and artificial intelligence basics on small to medium datasets. You can find additional information, technical guidance, and user credentials on the project website https://ubix-linux.sourceforge.io/ or on the project subreddit https://reddit.com/r/UbixLinux. -
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feed4weka is an open library that enriches weka (http://www.cs.waikato.ac.nz/ml/weka/), an open source project for data analysis. It integrates new classification and clustering algorithms, and adds the coclustering and outlier detection frameworks
