Search Results for "transcript"
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Showing 45 open source projects for "transcript"
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Podcastfy.ai
Transforming Multimodal Content into Captivating Multilingual Audio
Podcastfy is an open-source Python package that transforms multi-modal content (text, images) into engaging, multi-lingual audio conversations using GenAI. Input content includes websites, PDFs, youtube videos as well as images. Unlike UI-based tools focused primarily on note-taking or research synthesis (e.g. NotebookLM), Podcastfy focuses on the programmatic and bespoke generation of engaging, conversational transcripts and audio from a multitude of multi-modal sources enabling... -
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vcf2maf
Convert a VCF into a MAF
vcf2maf is a Perl-based tool developed by the Memorial Sloan Kettering Cancer Center to convert Variant Call Format (VCF) files into Mutation Annotation Format (MAF) files. This conversion standardizes variant annotations, facilitating downstream analyses in cancer genomics. -
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kallisto
Near-optimal RNA-Seq quantification
kallisto is a program for near-optimal quantification of transcript abundances from RNA-Seq data, or more generally of target sequences using high-throughput sequencing reads. It is based on the idea of using pseudoalignment to quickly determine reads and targets’ compatibility, with no need for alignment. According to benchmarks done on a Mac desktop computer, kallisto can quantify 30 million human bulk RNA-seq reads in less than 3 minutes with just the read sequences and a transcriptome index, that in itself can take more than 10 minutes to build. ... -
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Meetily
Privacy first, AI meeting assistant with 4x faster Parakeet/Whisper
...It’s built for organizations that want meeting intelligence without sending recordings or transcripts to third-party cloud services, which helps address compliance and data sovereignty requirements. The app supports live transcription with local model options (including Whisper- and Parakeet-based workflows) and presents the transcript as the meeting happens, making it useful both for note-taking and accessibility. After or during the session, it can produce structured, AI-generated summaries, and it’s designed to be flexible about where that summarization comes from, supporting local providers as well as external endpoints when allowed by policy. -
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yt-fts
Search all of YouTube from the command line
yt-fts, short for YouTube Full Text Search, is an open-source command-line tool that enables users to search the spoken content of YouTube videos by indexing their subtitles. The program automatically downloads subtitles from a specified YouTube channel using the yt-dlp utility and stores them in a local SQLite database. Once indexed, users can perform full-text searches across all transcripts to quickly locate keywords or phrases mentioned within the videos. The tool returns search results... -
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AutoCut
Cut videos with a text editor
...AutoCut supports multiple transcription backends, including Whisper and faster-whisper modes, allowing users to choose based on speed or accuracy needs. After editing the transcript text, the corresponding video clips are merged into the final output, and the tool also produces matching subtitle files. Its command-line interface can be integrated into scripts, making it suitable for automated workflows or batch processing. -
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claude-code-transcripts
Tools for publishing transcripts for Claude Code sessions
...The generated HTML includes interactive navigation and can optionally be published to GitHub Gists for sharing with collaborators or embedding in other documentation. It also supports including the raw session JSON alongside the transcript for forensic or archival purposes. -
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Petri
An alignment auditing agent capable of exploring alignment hypothesis
...Instead of building bespoke evals, Petri automatically generates audit environments from seed “special instructions,” orchestrates an auditor model to probe a target model, and simulates tool use and rollbacks to surface risky behaviors. Each interaction transcript is then scored by a judge model using a consistent rubric so results are comparable across runs and models. The system supports major model APIs and comes with starter seeds and judge dimensions, enabling minutes-to-insight workflows for questions like reward hacking, self-preservation, or eval awareness. Petri is designed for parallel exploration: it spins many audits in flight, aggregates findings, and highlights transcripts that deserve human review. -
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TileCreator
A soft for designing primers for overlapping tiles over a transcript.
# TileCreator Automatically design primers for overlapping tiles sweeping a given transcript. # Functionality It forces the location of the first forward primer at the beginning of the transcript and the last reverse primer at the end of it, extending them until achieving the desired Tm. Then, it slices the transcript according to the desired tile size, and adds reverse primers 35 nt downstream of that site and forward primers 35 upstream, also extending them until achieving the desired Tm... -
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MARS5
MARS5 speech model (TTS) from CAMB.AI
...To control speaker identity, MARS5 uses a short reference audio clip, typically between 2 and 12 seconds, from which it learns the voice characteristics. It supports two main inference modes: shallow clone, which is faster and only needs the reference audio, and deep clone, which additionally uses the transcript of the reference audio to increase similarity and naturalness at the cost of more computation. -
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LARA is software for musical analysis using (new) scientific methods for analysis and visualization. LARA is part of the core research: “Interpretation and performance” of the HSLU – Musik (University of Applied Sciences Luzern – Music depart
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EvidentialGene
Evidence Directed Gene Construction for Eukaryotes
...The basic Evigene methods involve using available best-of-breed gene prediction and assembly software, combining all evidence for genes, from expressed sequences, genome assembly sequences, related species protein sequences, and any other, to annotate and score gene constructions. Over-produced constructions are classified by gene evidence for best qualities per "locus", including genome-aligned and gene-transcript aligned (genome-free) locus identification. All software developed for EvidentialGene is publicly available. See project wiki/blog for notes. -
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PyExfil
A Python Package for Data Exfiltration
PyExfil was born as a PoC and kind of a playground and grew to be something a bit more. In my eyes it’s still a messy PoC that needs a lot more work and testing to become stable. The purpose of PyExfil is to set as many exfiltrations, and now also communication, techniques that CAN be used by various threat actors/malware around to bypass various detection and mitigation tools and techniques. You can track changes at the official GitHub page. Putting it simply, it’s meant to be used as a... -
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RSCH8360WK10
Transcript 1
Spirituality in simulation -
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PPIXpress
specific protein interaction networks from transcript expression
...Since a simple reduction of the networks to the subset of expressed genes only scratches the surface of higher organisms’ regulatory capabilities, we propose the advanced method PPIXpress that allows to exploit expression data at the transcript-level and is thus able to also reveal alterations in protein connectivity caused by alternative splicing. The original publication can be found on https://bioinformatics.oxfordjournals.org/content/32/4/571 . -
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DualTranscriptDiscovery
Transcript-discovery approach for gene feature delimitation by RNA-seq
This project contains Python scripts usable for a dual transcript-discovery approach that improves the delimitation of gene features from RNA-seq data in the chicken model. Documentation: http://bio.biologists.org/content/biolopen/suppl/2018/01/17/bio.028498.DC1/BIO028498supp.pdf Citation: Orgeur M., Martens M., Börno S. T., Timmermann B., Duprez D. and Stricker S. (2018). A dual transcript-discovery approach to improve the delimitation of gene features from RNA-seq data in the chicken model. ... -
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SlideShare Downloader
SlideShare download
This utility allow you to download any presentation from slideshare. Even if the author disabled it. -
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MPprimer
a program for reliable multiplex PCR primer design
...It employs the widely used primer design program Primer3 and the primer specificity evaluation program MFEprimer to design and evaluate the candidate primers based on genomic or transcript DNA database, followed by careful examination to avoid primer dimerization. -
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riboshape
Predicting ribosome footprint profile shapes from transcript sequences
Riboshape is a suite of algorithms to predict ribosome footprint profile shapes from transcript sequences. It applies kernel smoothing to codon sequences to build predictive features, and uses these features to builds a sparse regression model to predict the ribosome footprint profile shapes. Reference: Liu, T.-Y. and Song, Y.S. Prediction of ribosome footprint profile shapes from transcript sequences. Proceedings of ISMB 2016, Bioinformatics, Vol. 32 No. 12 (2016) i183-i191. -
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The Alu knowledgebase integrates annotations of human Alus that could be queried easily to unveil new properties of these common genomic elements. For each Alu element, the closest gene and transcript are stored, as well their functional annotation according to GO, the state of the surrounding chromatin and the transcription factors binding sites inside the Alu. Izaskun Mallona, Mireia Jordà, and Miguel A. Peinado. "A knowledgebase of the human Alu repetitive elements." Journal of biomedical informatics 60 (2016): 77-83. ...
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EESST
Email Exchange of Secondary School Transcripts
...Thus, using the defined format better protects student privacy and independence than does current practice. Because transcripts are digitally signed by the originating school official, transcript recipients can independently verify that transcripts received directly from students have not been altered in transit. -
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ChIP-RNA-seqPRO
ChIP-RNA-sequencing-processing (ChIP-RNA-seqPRO)
ChIP-RNA-seqPRO: A strategy for identifying regions of epigenetic deregulation associated with aberrant transcript splicing and RNA-editing sites. Runnable python scripts packaged together with customized annotation libraries, demo data input and README guide. 9/26 : v1.1 Updated MAIN_IV to debug error thrown by python pandas no longer supporting 'subset'. This code will no longer be actively maintained/updated here. A cloud-based resource for comparative analysis of epigenetic, sequence variation, and expression datasets is now available. ... -
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PLEASE NOTE: THIS PROJECT PAGE WILL NO LONGER BE UPDATED - PLEASE USE THE GITHUB PAGE (https://github.com/gantzgraf/MutationMapper) TO FIND THE LATEST RELEASE (https://github.com/gantzgraf/MutationMapper/releases/latest). Predict functional consequences of mutations identified from sanger sequencing.
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Demolisher
Read and run Cryptic Studios games .demo files
Read, parse, render and run Cryptic Studios Inc. .demo files with ease. -
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TransGeneScan
TransGeneScan is a gene finding tool for metatranscriptomic sequences
...TransGeneScan incorporates strand-speci c hidden states, representing coding sequences in sense and anti-sense strands on transcripts in a Hidden Markov Model similar to the one used in FragGeneScan (http://fraggenescan.sourceforge.net/), and can predict a sense transcript containing one or multiple genes (in an operon) or an antisense transcript.
