Search Results for "gnu science" - Page 79
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Showing 5828 open source projects for "gnu science"
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Analysis
Application to creating charts.
The goal of project is delivering useful and simple tools to creating charts. Functionality is provided by modules/plugins (OSGi technology). It allows you to create your plugins or customize Analysis application (by changing installed plugins in application). The Application, thanks to JAVA technology, is portable on the most operating system. In Files page you can find the application and also patches to its. -
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This project provides a set of libraries written in Java to easily manipulate Multi-Criteria Decision Aid (MCDA) concepts, especially related to outranking methods, and XMCDA files.
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TikZ-dependency
A LaTeX library to draw all sorts of dependency trees and graphs
TikZ-dependency allows you to draw dependency graphs in LaTeX documents with little or no effort. The package has a very easy to learn, high level interface that can be used to draw simple dependency trees, complex non projective graphs, bubble parses, and in general any kind of graph which is based on a sequence of nodes and edges among these. It is based on PGF/TikZ and it can be used either with latex or pdflatex. It comes with a very comprehensive documentation that will get you... -
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An IDE for CellML 1.1 user models developed in UNSW as an open source project. Author: Mitchell Lanesbury 2012
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TheCounter was designed as a helping hand for people who need to count specifically labeled cells in histochemically or immunohistochemically stained tissue samples.
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HOPSA, high oxygen pressure sputter automation, is a Python 3 project to control a step wise sample creation Process. Although written for this specific task it is easy to adopt for any experimental task which changes hardware parameters and waits for a specific condition before proceeding. The graphical interface (QT4) includes plotting (matplotlib), instrument configuration/monitoring and a program step creator. The communication with the hardware is independent of the GUI and any number...
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polyclip
A free library for fast clipping of arbitrary polygons
polyclip is a free library for fast clipping of polygons, written in C++. It supports arbitrarily shaped polygons, including multi-part,self-intersecting and holed polygons. Degenerate cases such as touching and overlapping polygons are also handled. polyclip is Free Software, available under the GNU LGPL license. -
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RAIDmap
An application to help researchers organize their research data.
RAIDmap (for Research Activity Information Development Mapping) is a prototype application to help researchers organize their research data records. It provides a file metadata harvester and a means of visualizing the associations between both digital and physical records which constitute research data sets. -
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YANG (Yet Another Network Generator - Java) enables you to generate social networks given various social rules observed in the real population. Uses: generate realistic networks to be used in individual-centric models, teaching or benchmarking.
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A portal project to produce a web based front end to a compute resource, such as a cluster, using PHP, mysql, apache and perl. The intent is to allow non-programmers to use complex programs through an intuitive web interface.
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Redundancy due to cut-paste operations in text creates bias in machine learning for NLP. This module takes a directory and produces a subset of the files in that directory (in a list) with an upper bound on similarity between two files.
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Genome-tools provides flexible tools and a simple API for genomic sequence processing on genomes published in the standard Genbank format. A CGI-based web interface is also available. Please cite: Lee, W., Chen S.L. BioTechniques 33:1334-1341 (Dec 20
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CADI is an implementation of the JPIP standard (JPEG2000 Interactive Protocol - Part 9). CADI includes a JPIP server, a JPIP proxy, and a JPIP Client. CADI is designed and programmed with the aim to provide a flexible framework to test and develop ne
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samsn
A tool to handle multi-stage mass spectrometry data
The source code for SAMSN can be found in github at https://github.com/miquelrojascherto/samsn -
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CRUMp
A probabilistic prediction system of protein phosphorylation sites
CRUMp is based on a kernel-based learning method called Classification Relevance Units Machine (CRUM). Given an input set of protein sequences in FASTA format, the system outputs the position, residue type (S, T, or Y), and the estimated probability of each tested site being phosphorylatable. Latest downloadable files: - crump-0.2.0.tar.gz: CRUMp GNU Octave package - crump-0.2.0.zip: CRUMp MATLAB script - crumptestset.fasta: A testing dataset in FASTA format. The sequence headers list... -
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RELATED - REmotes LAboraTories extenED
Java Framework for developing of remote/virtual laboratories
RELATED framework proposes a structured methodology of remote/virtual labs development and, also, provides common facilities as user management, booking, basic visualization (trend graphs and direct interaction using interactives variables), data logging and experimental session’s control. In order to get these facilities, an RLAB (Remote LABoratory) system it defined using a formal specification of a virtual or remote laboratory (based on XML and used to structure components for... -
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Simplex-in-PHP are PHP scripts that solve small linear programming and integer linear programming problems executing the simplex method step by step, printing the tableau and drawing the graphical analysis. Useful for students in Operational Research
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Parallel Content-Based matching algorithm running on multi-core CPUs and on CUDA GPUs. It includes a translator from the SIENA publish/subscribe system events and subscriptions and a large number of workloads to test its performance.
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Dinapter:
Generate adaptation contracts between incompatible services
Dinapter automatically generates a mapping between methods of incompatible components/services based on their public interfaces and behaviors. It uses a combination of expert system and A* algorithm. Dinapter is the prototype resulting from a couple of research papers: * J.A. Martín, E. Pimentel. Automatic Generation of Adaptation Contracts, FOCLASA'08, ENTCS, 2008 - http://goo.gl/21iJZ * J.A. martín, E. Pimentel. Dinapter: Automatic Adapter Specification for Software Composition,... -
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Firefly UML
A free, easy-to-use and user-friendly Java-based UML editor.
Firefly UML is a 100% pure Java application designed to create and edit UML conform diagrams. With class diagrams, sequence and instance diagrams, Firefly UML provides a solid selection from the vast range of existing UML diagram types. Firefly UML is really easy to learn as it provides you multiple ways of access to the same function - be it mouse action, hotkey, context menu or toolbar icon. And the best thing is: once you have learned how to handle one type of diagram, you also have... -
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Linking Yabi with RDA
This software system enables publication of YABI workflows to the RDA.
Modern life science research requires bringing together Biology and Information technology. To help make this process easier, the CCG has developed YABI, an Internet based workflow application that is aimed at biologists who wish to conduct bioinformatics analysis. YABI integrates bioinformatics tools and data via an intuitive workflow creation and management environment. YABI can be used to access the NCI-SF in Bioinformatics and the tools available through the Embl Australia EBI mirror... -
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LabMonkey Embedded Automation Platform
Create networks of embedded devices for data logging/automation tasks.
LabMonkey is a collection of designs for embedded devices which can be networked together to provide a range of automation, data logging and signal processing functions. A key design objective is to use as little dedicated hardware as possible for communication between nodes in the network, and to be able to adapt the network topology in real-time so as to minimize the occurrence of collisions between packets. To achieve this, a protocol has been designed specifically for the task, and...
