Search Results for "plots" - Page 6
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Showing 250 open source projects for "plots"
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Zika-RNAseq-Pipeline
An open RNA-Seq data analysis pipeline tutorial
... configuration overhead. The pipeline enables the extraction of knowledge from typical RNA-seq studies by generating interactive principal component analysis (PCA) and hierarchical clustering (HC) plots, performing enrichment analyses against over 90 gene set libraries, and obtaining lists of small molecules that are predicted to either mimic or reverse the observed changes in mRNA expression. -
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stellarics
Inverse Compton emission from heliospheres of sun and stars
Cosmic ray electrons scatter on the photon fields around stars, including the sun, to create gamma rays by the inverse Compton effect. This program computes the spectrum and angular distribution of this emission. The software also includes general-purpose routines for inverse Compton scattering on a given electron spectrum, for example for interstellar or astrophysical source modelling. For further information see these publications: http://arxiv.org/abs/astro-ph/0607563,... -
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SCons gnuplot tool
SCons tool to cooperate with gnuplot program
... of LaTeX documents, scientific comunity and authors of the projects relying on automatic generation of plots. -
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n-chinese-remainders
chinese remainder theorem - progressive solving, n-soln, extras
... shows sawtooth CR waves and visible soln align1: solves i m2 == j m2 + b -> {i,j,dist} (like PowerMod->i but b is any and gcd(m1,m2) not req.) other funs: Euclidians, showFactors, changeBaseArr, caesar, rsa, inverseMod, IntToModTups (large number math for PC's) crfindnSolnAfterxInEqm (solve saw wave LL,RL,LR,... intersects) congruence, plots, y-shifted triangular wave solve, testing (for historic reasons files are also in https://sourceforge.net/projects/periodictablemm/) -
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... to the students, they gain a better intuitive understanding of the science that is hidden at the first glance in the usual representation of data - the abstracted plots. In this paper, we present EduKit a software environment based on ROOT framework intended for helping the students learn about the interested nuclear phenomena in a dynamical and graphical interaction. The main goal of EduKit is to setup the required environment for developers in order to create/run a complete educational environment
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MetricTens: Crystallography
GUI that enables crystallographic computations for all seven crystal s
This GUI was created in MATLAB and serves as an educational tool for both novice and experienced crystallographer, and as a quick tool to make crystallographic computations. This GUI allows the creation of stereographic projection as well as the individual computation of angles between planes and directions for all seven crystal systems. Those who work in preferred orientation of polycrystalline materials or single crystals might find this GUI useful. To view code, check MATLAB File... -
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wxEcMath
Easy mathematics in wxWidgets
Tiny library written in C++/wxWidgets designed to manage mathematical objects : parser of expressions, plots, matrixes and complex numbers. Ansi and Unicode are supported. Documentation and rich samples are provided. Compiles with MSVC, BCC, GCC and Clang. Now on Git. -
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JFreeChart is a free (LGPL) chart library for the Java(tm) platform. It supports bar charts, pie charts, line charts, time series charts, scatter plots, histograms, simple Gantt charts, Pareto charts, bubble plots, dials, thermometers and more. *** JFreeChart has moved to GitHub: https://github.com/jfree/jfreechart ***
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ppienergy
Compute Protein Protein Interaction Energy Profile
Protein-protein interactions (PPIs) are crucial for understanding the signaling and disease mechanisms in a cell. In the present work, we have developed a new approach to explore the energy landscape of protein-protein interactions by employing a rapid modified DFT-D approach using the atomic coordinates obtained from X-ray and NMR spectroscopy data. The distance energy plots of contact residues in the interacting regions of several experimentally validated protein-protein complexes were... -
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Creates interactive plots of data lines over a time scale. Automatic detection of input format and scale will result in instantaneous results without any need for configuration.
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PHPlot
A PHP class for creating graphs, plots, charts
PHPlot is a PHP graphics class for creating charts and plots. It works with PHP5 and the PHP GD extension to produce PNG, GIF, or JPEG images. TrueType fonts (TTF) are optional, or built-in GD fonts can be used. The available plot types include: area, bars, line/points, lines, pie, points, squared, stacked-bars, and thin bar-line. Labels, tick marks, plot legend, and X/Y axes and more are all configurable. Images can be imported as a background, multiple graphs can be drawn on one image... -
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Python Control Systems Library
Feedback control system analysis and design
The Python Control Systems Library, python-control, is a python module that implements basic operations for analysis and design of feedback control systems. This homepage for this project is at http://python-control.org and the code base in maintained at https://github.com/python-control/python-control. Information on this page is out of date, but left here for posterity. -
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EpidermalERKMAPK
Scripts for Modelling Human Epidermal ERK-MAPK Activation
...-0509-4-157]. This package includes: - MATLAB code containing the model definition, together with a script to perform non-linear least squares optimisation for a subset of parameters - python scripts which use libSBML to create an SBML representation of the model - SED-ML scripts which execute the SBML model under a range of conditions, produce output plots to recapitulate results shown in Cursons et al. (2015). -
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Copy Number Explorer
Interactive Copy Number Analysis for Cancer Genomics
... chromosomal and region-based queries more relevant to some researchers. Copy Number Explorer creates interactive CNV frequency, GISTIC-style and breakage frequency plots from public (or your own) data. The program is written in R and Perl and can be deployed online using ShinyApps.io . Copy Number Explorer is available under the GNU public license (GPL-3). Check the Wiki for details on how to run your own Copy Number Explorer instance. -
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rarFit
Maximum Likelihood fitting programme using ROOT and RooFit
A maximum likelihood fitting package based on ROOT/RooFit for HEP. The fitting is driven by a text file and includes the following main options: 1) fitting, plotting and extraction of PDFs; 2) fitting of maximum likelihood models; 3) creation of projection and sPlot plots; 4) scanning about maximum likelihood minima; 5) combination of maximum likelihood curves with systematic errors for extraction of significance and combined errors; 6) toy studies; 7) means and pulls on fitted observables... -
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Data visualization tool
scientific data visualization, time history, scatter plots, spectral
View/plot/graph scientific data such as time history, scatter plots, PSD, Bode, Flight track, tephigram, linear regression (single and multi variate). Playback was developed for aerospace and atmospheric research environment and as such support plotting specifically for these disciplines but it is by no means limited to these and contains many generalized plotting and data visualization capabilities. Playback uses GTK2 and compiles under Linux. It has been compiled under windows... -
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ccwatcher
A computational chemistry monitoring, parsing and plotting application
ccwatcher monitors the progress of computational chemistry calculations during runtime. It has both a GUI and a "Command Line Interface" to which it parses important output and plots SCF energies. -
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SQL_DataPlotter
Time series plots of data from database
Designed to display performance data from AWS/RDS hosted database. Programmed in C++ using Qt 4.8.5, initialization of plots rendered as JSON. Some data gathered by periodic: (SELECT 'status_datetime' AS VARIABLE_NAME, LOCALTIME() AS VARIABLE_VALUE) UNION (SELECT VARIABLE_NAME, VARIABLE_VALUE FROM INFORMATION_SCHEMA.GLOBAL_STATUS ORDER BY VARIABLE_NAME); and the rest CloudWatch metrics gathered via the AWS API. -
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CNV Explorer
Interactive Copy Number Analysis for Cancer Genomics
..., current tools focus on individual gene queries rather than chromosomal and region-based queries more relevant to some researchers. CNV_Explorer creates interactive CNV frequency, GISTIC-style and breakage frequency plots from public (or your own) data. CNV_Explorer is written in R and Perl and can be deployed online using ShinyApps.io . CNV_Explorer is available under the GNU public license (GPL-3). Check the Wiki for details on how to run your own CNV_Explorer instance! -
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VEEL
Visualize Estimates of Exponential Learning
VEEL is a simple tool to make plots of exponential learning curves for behavioral experiments. It also provides parameter estimates in output files. -
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Maxima poles-zeros for analog circuits
Maxima script for symbolic analysis of analog integrated circuits
Script for Maxima (a Computer Algebra System) that performs symbolic analysis of analog integrated circuits. Script allows to find approximated poles and zeros of transfer functions, developed and optimized for transfer functions of amplifiers, but can be used also for any general analog circuit. The script calculates DC transfer function, zeros, poles and creates Bode plots. DC transfer function, zeros, poles result simplified so main contributing elements can be easily identified. Poles... -
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MatStrat is a new open source Matlab toolbox that generates publication-quality stratigraphic plots and enables quantitative analysis of stratigraphic data.
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ColorApplet
Qt Applet for color conversion
Qt Applet for color conversion between different spaces (XYZ, xyz, L*U*V*, LAB (Hunter), L*A*B*, RGB, sRGB, Adobe RGB, YIQ, Y'UV). Gives the color for a Black Body at a given temperature. Plots the chromaticity diagram and gives an approximation of the dominant wavelength and purity. Plots the histograms for an input image in a given color space. -
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It's a program that plots Bode diagrams with an excellent precision. In this new version it's very easy to provide the function to plot thanks to a simply graphic interface in style "what you see is what you got". A smart output window allows to plot more than one graph at the same time, and easily compare them. The plotted graphs can be exported as images, in various format. Language supported: italian. Next version probably will include other languages; certainly english...
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SnowMicroPyn
Python based reader for SnowMicroPen® .pnt measurements
SnowMicroPyn is an opensource reader for SnowMicroPen® files in binary .pnt format. The reader is Python based and published as source code as well as compiled executable for Windows, Linux and Mac. The software is preliminary, thus please report bugs. For further information, please read the Readme.txt in the download section. The SnowMicroPen® (SMP) is developed by the WSL Institute for Snow and Avalanche Research, Davos. The SMP is the first high-resolution snow penetrometer. It is...