Search Results for "gnu science" - Page 49
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Showing 5828 open source projects for "gnu science"
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GraspIt
A simulator for robotic hands.
A simulator for robotic hands. This repository still contains the (somewhat outdated) releases and user manual. For the latest source code (recommended) please go to https://github.com/graspit-simulator -
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Virus QSP Modeling
C++ and Python code for simulating RNA virus replication
Stochastic simulation model of poliovirus Sabin-to-Mahoney genetic state transition (C++ code). Models genotypes, virus populations, and quasispecies cloud. Simulates replication error and copy-choice recombination. Various parameters guiding the model are user-specified. Python code post-processes simulation output to produce report files. -
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FreeFOAM is no longer maintained. Please consider using one of the official OpenFOAM distributions instead.
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The CorneliOS WebOS is an easy-to-use and cross-browser "Web Desktop Environment", "Web Operating System" or "Web Office". It's also a powerful web application framework that can be used to build community platforms.
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XdevL is a powerful cross-platform C++ Object and Plug-In Oriented programming framework which helps you developing Games or device oriented applications. The whole system can be extended using additional Plug-In's which makes it extreme flexible.
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Gen3D
A tool for 3D genome and chromosome structural model construction
Gen3D is an application designed to determine three-dimensional genome and chromosome models. It uses chromosomal contact data to construct three-dimensional conformations. This method can generate three-dimensional chromosomal models satisfying a large portion of chromosomal contacts. The software is developed in Prof. Jianlin Cheng's Bioinformatics, Data Mining and Machine Learning Laboratory in the Computer Science Department at the University of Missouri - Columbia, USA. The project... -
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Bayesian Analysis: Neutron Stars, M & R
Bayesian Analysis of Neutron Star Mass and Radius Observations
A Bayesian analysis of neutron star mass and radius observations based on O2scl. -
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Qi - Quantitative Imaging (PIV and more)
A collection of MATLAB tools for PIV, PTV, particle sizing, and more.
Qi is a collection of MATLAB tools for the quantitative analysis of flow field images. Our Particle Image Velocimetry (PIV) tool, prana, implements a Robust Phase Correlation kernel for PIV analysis, and now includes Particle Tracking Velocimetry and sizing tools. Tools for pressure calculation, proper orthogonal decomposition (POD), and 3d imaging are under development. -
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Mocapy++ is a Dynamic Bayesian Network toolkit, implemented in C++. It supports discrete, multinomial, Gaussian, Kent, Von Mises and Poisson nodes. Inference and learning is done by Gibbs sampling/Stochastic-EM.
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Hunspell is a spell checker and morphological analyzer library and program designed for languages with rich morphology and complex compounding or character encoding. Hunspell interfaces: Curses, Ispell compatible pipe interface, OpenOffice.org UNO module
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GESPA
Accurately predicts disease association of single nucleotide mutations
GESPA (GEnomic Single nucleotide Polymorphism Analyzer) is a bioinformatics tool for classifying Nonsynonymous Single Nucleotide Polymorphisms (nsSNPs). GESPA predicts if a nsSNP is pathogenic using reports from literature and various algorithms to assess conservation in orthologous and paralogous protein alignments. Using reports from literature, GESPA is also able to predict the phenotype of a nsSNP with high accuracy. The software can be used clinically to determine if observed nsSNPs are... -
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binana
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyz
BINANA (BINding ANAlyzer) is a python-implemented algorithm for analyzing ligand binding. The program identifies key binding characteristics like hydrogen bonds, salt bridges, and pi interactions. As input, BINANA accepts receptor and ligand files in the PDBQT format. PDBQT files can be generated from the more common PDB file format using the free converter provided with AutoDockTools. As output, BINANA describes ligand binding. NOTE: The latest version of BINANA is now hosted at... -
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The JINSECT toolkit is a Java-based toolkit and library that supports and demonstrates the use of n-gram graphs within Natural Language Processing applications, ranging from summarization and summary evaluation to text classification and indexing.
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YAGY
Computer calculations made easy
Yagy is a (yet another) Graphical user interface for Yacas, a (yet another) Computer Algebra System. NOTE: Yacas and yagy development has moved to github. The new repositories are located at https://github.com/grzegorzmazur/yacas and https://github.com/grzegorzmazur/yagy . The mailing list has been moved over to https://groups.google.com/forum/#!forum/yacas . The downloads section at sourceforge will be kept up to date for the foreseable future. -
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MZmine 2
A framework for differential analysis of mass spectrometry data
MZmine 2 is a framework written in Java for differential analysis of mass spectrometry data. -
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dotCMS
dotCMS helps enterprises create, manage and deliver content anywhere.
dotCMS is a visual, headless CMS built for compliance-led enterprises that need to manage and scale digital content across brands, regions, and channels. From streamlining governance to enabling visual editing at scale, dotCMS powers global organizations like Telus and BNP Paribas to consolidate platforms, reduce overhead, and launch faster. Whether you're managing 10 or 1,000+ sites, dotCMS brings flexibility, security, and efficiency to enterprise content operations. -
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GenomeView is a genome browser and annotation editor that displays reference sequence, annotation, multiple alignments, short read alignments and graphs. Most major data formats are supported. Local and internet files can be loaded. This project has moved to GitHub: https://github.com/GenomeView/genomeview
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gametes
Generate complex SNP models and heterogeneous datasets
Genetic Architecture Model Emulator for Testing and Evaluating Software (GAMETES) is an algorithm for the generation of complex single nucleotide polymorphism (SNP) models for simulated association studies. GAMETES is designed to generate epistatic models which we refer to as pure and strict, that constitute the worst-case in terms of detecting disease associations, since such associations may only be observed if all n-loci are included in the disease model. User friendly GAMETES software... -
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Manipulation and analysis of psychophysiological data (e.g. peripheral physiology, EEG, MEG). This toolbox has a special focus on time-frequency approaches, including amplitude and phase-synchrony. Developer Project Home: http://www.ccnlab.umd.edu/Psychophysiology_Toolbox/
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MathToWeb is a Java-based authoring tool that converts mathematical expressions written in AMS-Latex to presentation MathML. It can be applied to single equations or entire documents containing many hundreds of equations.
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PalOOCa OpenOffice Extension for Palo
palo olap open office calc plugin for data analysis
The PalOOCa Project offers a fast, flexible and intuitive Office-based Business Intelligence solution based on Jedox. It provides an extension for OpenOffice.org Calc which allows both, read and write, access to data from within the Jedox OLAP Server via Calc. If used together with the Open Source Jedox/Palo OLAP Server it completes the Open Source MOLAP-Stack for Business Intelligence. Additionally to Jedox OLAP it is also (read-only) compatible to (almost) all OLAP servers supporting... -
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jFuzzyLogic is a java implementation of a Fuzzy Logic software package. It implements a complete Fuzzy inference system (FIS) as well as Fuzzy Control Logic compliance (FCL) according to IEC 61131-7 (formerly 1131-7).
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OpenGisScada
Sistema de Control Medioambiental
Version 1.0 - Controles java para supervision de informacion distribuida geograficamente. Utilidades GIS, comunicaciones, bases de datos, graficas, protocolos. Versión 2.0 - Arquitectura J2EE, sobre servidor de aplicaciones JBoss NUEVO: Versión 2.1 - Migrado a JBoss-as-7.1.1-Final -
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XLogo4Schools
A Logo interpreter and programming environment specialized for schools
A Logo interpreter and programming environment specialized for schools. It is a revised version of XLogo, published on http://xlogo.tuxfamily.org/. The Logo dialect is almost the same as Xlogo's, but some Logo commands were reimplemented to fit with the new programming environment and workspace. Some commands which were buggy in the original XLogo have been fixed. The interpreter works now more efficient due to the usage of more suitable data structures. The output of turtle graphics...
