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NetBuilder' is a tool for building, visualizing, and simulating multi-layered biological networks, structured as hierarchical Petri-nets. It has a built-in stochastic simulator, but also provides easy access to other simulation and analysis.
OWSLib is a Python package for client programming with Open Geospatial Consortium (OGC) web service (hence OWS) interface standards, and their related content models.
Web interface for python math modules. Developed with web2py. It uses pure python modules for easy deployment . Math2py requires the mpmath library installed with web2py. Download and unzip mpmath in web2py/site-packages
Software to identify cavities and crevices in proteins. The goal is to be able to take a protein structure, and to differentiate between five different types of environments for each residue: buried, surface, interfacial, cavity, or crevice.
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A python package that allows scientists to easily create configurable and reusable experiments. Intended for use with the LabRAD framework. Developed by the Haeffner group studying quantum simulation at UC Berkeley. Wiki at lrexp.wikispaces.com
PLAtypus's goal is to give people with poor communications skills an opportunity to learn and improve. With the guidance of a tutor, people will be able to learn new signs, sounds or icons and associate them with real life concepts that will, hopefully, help them to better express they needs.
DataFinder is a data management client developed in Python that primarily targets the management of scientific technical data. The system is able to handle large amounts of data and can be easily integrated in existing working environments.
PyExPsiN is a Python crossplatform (Linux/Windows) module for made easy writing psychological experiments. Right now includes functions for DMTS (Delayed Matching to Sample), N-Back, Spatial N-Back, "Grammatical", Mixed Dots, Stroop, and more.
An Economy Simulation with many Possibilities trying to be near to reality. Using XML, Python an OpenGL to make it useable on many OS. And also beeing an simulation taht can be so realistic that ist could be used for research (maybe).
PySpline is a graphical, cross-platform program for processing X-ray absorption spectroscopy (XAS) and Extended X-ray absorption fine structure (EXAFS) data. It allows processing parameters to be adjusted and observe the effect on R-space data.
naga EDA devotes to provide useful electronic design tools in C++ and, especially, Python. The current release contains naga.Verilog, a Verilog parser. Please visit project homepage http://naga-eda.org for more information
Synthetic Biology Software Suite (SynBioSS) is composed of a wiki for biochemical kinetic constants, a graphical interface for simulating synthetic biological pathways, and a simulator that runs on either a desktop or supercomputer.
Flow Investigation using N-Dimensions (FIND) is a program designed for analysis and visualization of Flow Cytometry data. FIND focuses specifically on automated population discovery (clustering) methods. The project targets both users and developers.
Oree - Optimum Real-time Estimation of Events of Interaction: real-time reconstruction of photon interaction events in Gamma Cameras. Optionally making use of a CUDA enable GPU, Oree achieves reconstruction of over 1M events/sec.
Echoproc is a piece of scientific analysis software used to extract physical ice sheet characteristics from radio echograms from experiments like the Center for the Remote sensing of ice sheets (https://www.cresis.ku.edu/)
This is the RoboCup Mixed Reality Project: a standard research and educational platform integrating cutting edge and low cost watch technology into a miniature multi-robot system which mixes reality and simulation.
PyMOL Plugins aims to provide many plugins for the PyMOL software.
You can find further informations about PyMOL on this website:
http://www.pymol.org/