Search Results for "data analysis" - Page 38
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Showing 2196 open source projects for "data analysis"
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bluehair2_gl02
GL02_sujet B A tool to help analyze mails
The consulting firm UIConsult wishes to have a tool to help analyze the communications of its teams of collaborators. This analysis is produced in a report form called Rcom. General speaking, this program will be able to read a large number of communication data, create graphs and export them to help the team leader produce the RCom. -
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Somatic APP analysis
Reanalysis of somatic APP retrotransposition
...Modules for two different analyses--detection of intra-exonic junctions (IEJs) and estimation of APP gencDNA fraction--are provided. A detailed description of our analysis is available in our bioRxiv paper (https://bit.ly/35Kgfbu). [ Basic usage ] • Detection of IEJs connecting APP exons java -jar somaticAPP.jar -D -b input.bam [optional_arguments] * Input data: PRJNA577966 * The input bam should be mapped to APP751.fa (provided in the 'data' folder) and sorted by read name after mapping • Estimation of gencDNA fraction java -jar somaticAPP.jar -F -b input.bam -a BWA_PATH -s SAMTOOLS_PATH [optional_arguments] * Input data: PRJNA493258 * The input bam should be a human-genome-mapped (hg38), coordinate-sorted, and duplicate-marked file. ... -
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NiftyNet
An open-source convolutional neural networks platform for research
...Adapt existing networks to your imaging data. Quickly build new solutions to your own image analysis problems. NiftyNet currently supports medical image segmentation and generative adversarial networks. NiftyNet is not intended for clinical use. -
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Fav-up
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...Results can be printed to the console or exported into structured formats such as CSV or JSON for further analysis and reporting. -
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Feather
Binary data frame storage for Python, R, and more
Feather is a fast, interoperable binary data frame storage format designed for efficient data exchange between analysis tools. It provides columnar serialization for data frames, making read and write operations faster than many text-based formats. The project was built to make sharing data across languages such as Python and R easier. Feather is powered by the Apache Arrow columnar memory specification, which helps it represent numeric, string, categorical, date, timestamp, boolean, and binary data efficiently. ... -
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An open source framework for LC-MS based proteomics and metabolomics. OpenMS offers data structures and algorithms for the processing of mass spectrometry data. The library is written in C++. Our source code and wiki lives on GitHub (https://github.com/OpenMS/OpenMS).
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Inviwo
Interactive Visualization Workshop
Inviwo is a modern, open-source visualization framework designed for interactive visual data analysis and scientific computing. Built in C++ with a modular, extensible architecture, Inviwo combines a visual editor (for creating data pipelines) with a powerful runtime engine that supports real-time rendering, interaction, and GPU-accelerated processing. It’s widely used in scientific domains for building and sharing visualizations of complex data such as medical imaging, simulations, and machine learning models. ... -
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An introduction to Data Analysis in R
A guide for learning the basic tools on data anaylisis with R
An Introduction to Data Analysis in R [Book] A guide for learning the basic tools on data anaylisis: process, visualize and learn from your data using R programming. This repository holds the necessary data sets for the book "An introduction to Data Analysis in R", to be published by Springer series Use R!. The book can be purchased in XXX. The book is meant as an introductory guide to manipulate data sets in the Big Data paradigm. ... -
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OpenFace
A state-of-the-art facial behavior analysis toolkit
OpenFace is an advanced facial behavior analysis toolkit intended for computer vision and machine learning researchers, those in the affective computing community, and those who are simply interested in creating interactive applications based on facial behavior analysis. The OpenFace toolkit is capable of performing several complex facial analysis tasks, including facial landmark detection, eye-gaze estimation, head pose estimation and facial action unit recognition. OpenFace is able to... -
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Otter
Alibaba distributed database synchronization system
In Alibaba B2B company, because of the characteristics of the business, the sellers are mainly concentrated in the country, and the buyers are mainly concentrated in foreign countries, so it has derived the demand for the computer room in Hangzhou and the United States. At the same time, in order to improve the user experience, the structure of the entire computer room is double-A Both can be written, and thus a product like otter was born. The first version of otter can be traced back to... -
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TSA_CRAFT
Automatic command line tool for TSA data analysis
DSF is a high-throughput platform of TSA assay to screen various conditions that affect protein stability. To facilitate TSA data analysis, we developed an automatic tool "TSA-CRAFT". TSA-CRAFT was developed by integrating PERL script and Gnuplot. PERL scripts manage the entire workflow and data processing procedures of TSA data analysis. On the other hand, Gnuplot takes over the curve fitting and result presentation works. All analysed results are coded in an html file that can be easily displayed by a web browser. -
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EMA Toolbox
Eye Movement Analysis Toolbox
NEWS: The new version of EMA has just been released! This is a toolbox for Eye Movement Analysis implemented in Matlab. DEVICES EMA is able to parse gaze data from the following eye trackers: - SR Research (Eyelink 1000, Eyelink II) - SMI (RED 250) - Tobii EyeX SDK (EyeX and 4C https://sourceforge.net/projects/matlabtoolboxeyex/) FUNCTIONALITIES EMA provides the following functionalities: - data conversion from normalized to pixel to degrees - saccade identification - saccade kinematics - saliency map - main sequence STAY UP-TO-DATE Send me an email (ema.update@gmail.com) with subject EMA UPDATE if you want to be alerted when a new release comes out CREDITS Agostino Gibaldi and Silvio P. ... -
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MetaAnnotator
Fast and Accurate Taxonomic Annotation for Metagenomic reads
...You can use the archive version ftp://ftp.ncbi.nlm.nih.gov/genomes/archive/old_refseq/Bacteria/all.fna.tar.gz before that. Taxonomic annotation is a critical first step for analysis of metagenomic data. Despite a lot of tools being developed, the performance (both running time and accuracy) is still not satisfactory, in particular, when a close species-level reference does not exist in the database. we propose a novel annotation tool, MetaAnnotator, to annotate metagenomics reads which outperforms all existing tools significantly when only genus-level references exist in the database. -
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BDS
Blockchain data parsing and persisting results
JD Cloud Blockchain Data Service (BDS) is a real-time data aggregating, analyzing, and visualization service for chain-like unstructured data from all kinds of 3rd party Blockchains. Splitter is the key module of Blockchain Data Service (BDS) and provides data analysis capability. Splitter is responsible for consuming blockchain data from message queue (kafka) and inserting data into persistent data storage services (relational database, data warehouse, etc.) for further processing. ... -
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Olex2 is visualisation software for small-molecule crystallography developed at Durham University/EPSRC. It provides comprehensive tools for crystallographic model manipulation for the end user and an extensible development framework for programmers. The project has been supported by Olexsys Ltd since 2010.
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DSeg software
A MATLAB program to segment filamentous bacteria and hyphae structures
The analysis of microscopy image has been the basis to our current understanding of the cellular growth and morphogenesis. The quantitative evaluation of morphological changes in the biological processes is therefore important to characterize cell structures. Here we present an image analysis tool DSeg to overcome the difficulties in finding complicated elongated cell shapes by using time-lapse data and cell morphological constraints. -
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MediaInfo
A unified display of relevant technical and tag data for A/V files
MediaInfo is a convenient unified display of the most relevant technical and tag data for video and audio files. -
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ggplot2-book
ggplot2: elegant graphics for data analysis
The ggplot2-book repository contains the source for ggplot2: Elegant Graphics for Data Analysis, written by Hadley Wickham. The book explains the theory and application of the ggplot2 package in R for data visualization, guiding readers through its layered grammar of graphics approach. It serves as both a practical guide and conceptual reference for building advanced plots and mastering ggplot2. -
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Girls-In-AI
Free learning code series: Xiaobai's introduction to Python
Girls-In-AI is an educational repository created to encourage women and beginners to learn programming and artificial intelligence through accessible tutorials and practice materials. The project provides a collection of beginner-friendly learning resources covering Python programming, data analysis, machine learning, and deep learning topics. It aims to lower the barrier to entry for people who want to enter the field of artificial intelligence by offering structured learning paths and practical examples. The repository includes Jupyter notebooks, tutorials, and exercises that guide learners through topics such as data processing, machine learning model development, and Kaggle competition practice. ... -
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RobotsDisallowed
A curated list of the most common and most interesting robots.txt
RobotsDisallowed is a public catalog that tracks websites and organizations explicitly blocking AI and web-scraping crawlers in their robots.txt or related mechanisms. It focuses on documenting the growing trend of content owners asserting control over how their data is used for model training and automated harvesting. The project aggregates domains, notes the targeted bots or user agents, and surfaces patterns for researchers, policymakers, and tool builders. It serves both as a... -
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Camino is a free, open-source software package for simulation, analysis and reconstruction of Diffusion MRI data. Download the latest version of the code by clicking the "Code" tab and then "Download Snapshot". The green download button will get the latest major change (updated less frequently). For tutorials and more information, visit http://camino.org.uk. CAMINO IS A RESEARCH TOOL ONLY AND SHOULD NOT BE USED FOR CLINICAL PURPOSES.
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Facets
Visualizations for machine learning datasets
The power of machine learning comes from its ability to learn patterns from large amounts of data. Understanding your data is critical to building a powerful machine learning system. Facets contains two robust visualizations to aid in understanding and analyzing machine learning datasets. Get a sense of the shape of each feature of your dataset using Facets Overview, or explore individual observations using Facets Dive. Explore Facets Overview and Facets Dive on the UCI Census Income... -
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hiddenDomains
hiddenDomains: a modern HMM to identify ChIP-seq enrichment
hiddenDomains uses a Hidden Markov Model to identify enriched domains in ChIP-seq data. It accepts BAM files for input and can perform an analysis with or without control data. The output is a BED file, ready for the UCSC genome browser, that contains the domains and is color coded according to their posterior probabilities. -
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ECommerceCrawlers
Collection of Python ecommerce and website crawler examples projects
...It aims to help developers understand the full workflow of web scraping, including request simulation, data extraction, storage, and handling anti-scraping techniques. It includes crawlers for platforms such as ecommerce marketplaces, blogging platforms, recruitment sites, and social networks, providing real-world practice scenarios. Developers can study the individual project documentation to understand the analysis process.
