Search Results for "databases" - Page 34
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Showing 1797 open source projects for "databases"
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Spawner is a generator of sample/test data for databases. It can be configured to output delimited text or SQL insert statements. It can also insert directly into a MySQL 5.x database. Includes many field types, most of which are configurable.
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Genix: Bacterial Genome Annotation Pipel
A automated annotation pipeline for bacteria / archea genomes
Genix is an online automated pipeline for bacterial genome annotation that integrates the programs Prodigal, BLAST, RNAmmer, tRNAscan-SE, INFERNAL, ARAGORN and HMMER, and the databases Uniprot, Antifam and Rfam. -
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DaMold
a data mining platform for variant annotation and visualization.
...For each variant DaMold predicts the variant effect, such as codon change, and amino acid change. Furthermore, it cross-links each variant with more than 30 clinically relevant public databases, which contain already reported SNPs and INDELs from previous experimental studies along with associated genomic, proteomic, and clinical information. DaMold seamlessly integrates six widely used genome browser such as the UCSC genome browser, Ensembl genome browser, GWAS central genome browser, HapMap genome browser, 1000 Genomes browser, and NCBI variation viewer. ... -
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Sequel Pro
MySQL/MariaDB database management for macOS
Sequel Pro is a fast, open source, easy-to-use database management application for macOS that allows you to work with MySQL and MariaDB databases. It offers direct, easy access to your MySQL Databases on both local and remote servers. Since it is a native Mac OS X application, it can easily streamline your workflow, making it the ideal web development companion for Mac web developers or programmers. Sequel Pro is easy to install. Simply download it and connect it to your database. -
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DataMakerApi
An API for Java programmers to make test data
DataMakerApi is an API packaged as a jar for Java programmers to use in generating randomized test data in any quantity desired. An API is used because the output can take so many forms (SQL for traditional databases, JSON text for NoSQL databases, XML or delimited text for flat files, etc...). This API will facilitate the work of creating test data for a wide range of applications. -
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DBDoc
Database to PlantUml or yEd diagrams.
Program creates the database table diagrams from databases metadata. -
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readeef
Readeef feed agregator
...Similar to Google Reader, but on your own server. readeef is written in Go, and as of October 2017, requires at least version 1.8 of the language. The currently supported databases are PostgreSQL, and SQLite. SQLite support is only built if CGO is enabled. The later is not recommended, as locking problems will occur. A single binary may be built from the sources. It currently contains three subcommands, one for starting the server, one for rebuilding the search index (while the server is stopped), and an administrative command, for manipulating users. -
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benchmarksql2
based on benchmarksql, but there are more tpc benchmarks
based on benchmarksql, but there are more tpc benchmarks, and it can support more databases. -
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bioNerDS
Bioinformatics Named Entity Recogniser for Databases and Software
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Btrieval
Btrieve data export tool
A tool for exporting data out of Btrieve databases without the need for installing Pervasive SQL. If you do not have .DDF Files, this tool now contains a section to help you build the file specs. Files can be exported in Tab Delimited Format or Microsoft Excel. This program was written in Visual Studio 2010 C#. This program is released under the GNU General Public License. -
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Acacia
A generic biodiversity database management system
An interactive data entry, querying, and editing system based on a generic conceptual schema for taxonomic databases. It combines the automated use of scientific names and synonyms in a species checklist with online access to geographical data and common knowledge data (morphological descriptors, genomics, ecology, vernacular names, economic uses, structured notes and conservation status) about the species. All these data can be cross-indexed to a citation list. -
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Batabuddy 32bit (GUI)
Copy query data into different databases and file formats.
Copy query data into/from all major databases and some file formats (CSV, DDL). Written using Python/wxPython Bulk copy using bulk loaders (no ODBC or JDBC) #### noSQL Databases supported: 1. MongoDB #### SQL Databases supported: 1. Oracle 2. SQLServer 3. DB2 4. Sybase 5. Informix 6. MySQL 7. Infobright 8. MariaDB 9. PostgreSQL 10. TimesTen 11. SQLite More info at: https://github.com/data-buddy/DataBuddy/blob/master/README.md -
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JTurboExplorer
Database explorer to MySQL, Oracle, Sybase & others. Source maker JSF.
It is a tool to help programmers to check your databases and generate code so easily. Lists the tables and views of databases, MySQL, Oracle and Sybase. Load Data from Excel 97-2003 files, exports the data from the table to Excel 97-2003 file. Generate Stored Procedures from table to insert, update, delete, query and paging. Generates code JSF2.0 (Action) and PrimeFaces (xhtml) from the table, code for Struts 1.3, etc. -
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Protospacer Workbench
CRISPR/Cas9 guide-RNA design
Protospacer Workbench helps to design, analyze, and share CRISPR target-sites for any organism or set of FASTA formatted sequences. Design of guide-RNAs for the CRISPR/Cas genome editing system is intuitively easy, but computationally difficult. The main difficulty arises from the need to identify potential off-targets that may be quite different from the intended target. Current online tools for guide-RNA design provide a user friendly interface to sequence mapping software such as... -
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...All functions included on webpkj package was made to proporse a new expirence for the developer to manipulate almost all kind of dificulties that is founded during the web development. These are databases, email, images, jquery, ajax and much more.
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Opserver
Stack Exchange's Monitoring System
Opserver is a full-stack monitoring system originally developed by the Stack Exchange engineering team to provide deep operational visibility across large-scale production environments. It functions as a centralized dashboard capable of independently monitoring servers, databases, caches, and network components while aggregating them into a unified operational view. The platform supports a wide range of integrations including SQL Server, Redis, Elasticsearch, HAProxy, and external monitoring systems, making it highly extensible. Built on .NET technologies, Opserver can run across multiple operating systems and is designed for environments that require both infrastructure metrics and application-level diagnostics. ... -
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JDFeditor
GUI application for editing database files.
The purpose is to be a cross-platform, quick and simple database manager, main goal is to provide developers with a tool to produce small to medium size databases efficiently. If you need a database at its simplest form, without any extra hassle of knowing how to access the produced library. Then JDFeditor is the right tool for you. JDFeditor is bundled with an easy-to-use Python library: jdf_lib. jdf_lib will quickly load the content of your database into a variable. All you need to know is the filename! ... -
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Re-Annotator
Re-annotates Microarray Probes
...The manufacturers typically provide such annotation tables. However, these tables rely on older genome and transcriptome versions that differ substantially from the current state-of-the-art sequence databases. Re-Annotator is a re-annotation pipeline for gene expression microarrays that will bring probe annotations up-to-date! The preprint of the paper describing Re-Annotator and its advantages is available at bioRxiv: http://biorxiv.org/content/early/2015/05/21/019596 -
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STON
Translator of SBGN PD and AF maps into Neo4j graph database.
STON, Sbgn TO Neo4j, is a Java-based framework that imports and translates metabolic, signalling and gene regulatory pathways presented in SBGN (Systems Biology Graphical Notation, http://www.sbgn.org) Process Description (PD) and Activity Flow (AF) languages to a graph-oriented format compatible with Neo4j (http://neo4j.com/). STON1.2 allows also to link common processes between two different PD maps. This framework uses two sets of libraries: LibSBGN and Neo4j... -
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MySQL-Replication-Monitor
MySQL Replication Monitor (written in PHP)
With this Tool you can easily monitor the Replication of two MySQL-Database-Servers. It features global Overviews, Differences-Analysis for Databases and Tables, including Rowcounts, Sizes and Checksums. Written in PHP with mysqli Extension Functions. Planned Features: - Manage Masters/Slaves - Fix Replication Errors - Databasedumps for Download Questions? Contact me: steffen[at]php-works.net -
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UNICORE Life provides Life Sciences components for the UNICORE grid technology. UNICORE Life consists of set of user interfaces (gridbeans) to the popular Life Sciences applications, tools to access different databases and other extensions to the UNICORE
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Panglossa LexHoard
A simple vocabulary builder with Unicode support.
...LexHoard features: -Unicode support (with a built-in Unicode editor) -export for MediaWiki and HTML format -attribution of more than one meaning/translation/relation to each word The program is written completely in native Lazarus/FreePascal. The only non-standard library needed is ZeosLib. It uses SQlite databases, so no special drivers or servers are required - although you can easily change it to use any other database supported by Zeos. -
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Relational Algebra for MySQL
A relational algebra interpreter for MySQL databases
A robust Java implementation of relational algebra (RA) interpreter for MySQL databases. The interpreter receives relational algebra queries, converts them to equivalent MySQL queries, executes them, and prints the answers. Compiler tools JFlex and JCup are used to parse RA queries. Rigorous semantic checks are enforced so that invalid queries are not executed. The system is built as a Java terminal application. -
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Analyze My Genes
Compare gene analysis results from 23andme with the human genome
This program compares personal gene analysis results from 23andme with extracted databases from the human genome project. An typical example of an extracted database is a dataset which contains all alternative alleles which occur less than 1% of the time.
