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STON

Translator of SBGN PD and AF maps into Neo4j graph database.

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Description

STON, Sbgn TO Neo4j, is a Java-based framework that imports and translates metabolic, signalling and gene regulatory pathways presented in SBGN (Systems Biology Graphical Notation, http://www.sbgn.org) Process Description (PD) and Activity Flow (AF) languages to a graph-oriented format compatible with Neo4j (http://neo4j.com/).

STON1.2 allows also to link common processes between two different PD maps.

This framework uses two sets of libraries: LibSBGN and Neo4j libraries.

Requirements:
Java 1.8 is necessary.
Works with Neo4j Community Edition 2.3.1

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Additional Project Details

Intended Audience

Science/Research

User Interface

Java Swing

Programming Language

Java

Registered

2015-05-13

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