Search Results for "differential equation python" - Page 3
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Showing 90 open source projects for "differential equation python"
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SpliceSim is a collection of Python scripts designed for realistic simulation of RNA-seq reads for in silico differential AS studies. For software support and information on their distribution licenses, please proceed to: https://github.com/mingjiewong/SpliceSim
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WavePacket
Dynamics of quantum systems, controlled by external fields
WavePacket is a toolkit for numerical simulation of distinguishable particles. It can solve single or coupled time-independent or time-dependent (linear) Schrödinger and Liouville-von Neumann-equations, as well as classical or quantum-classical Liouville equations. External electric fields can be added within the semiclassical dipole approximation, thus WavePacket can be used to simulate modern experiments involving ultrashort light pulses in photo-induced physics or chemistry, including... -
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Archeotes is a backup software designed to be extremely flexible. Define exactly which files you want to save, encrypt, compress, keep old copies, encrypt path, safe delete of obsolete files. Complete and differential backup capability. Easy recovery
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Mathpad
A Python based command line math utility.
Mathpad is a command line utility. It will later have a GUI, but not at this time. -
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EpidermalERKMAPK
Scripts for Modelling Human Epidermal ERK-MAPK Activation
...Regulation of ERK-MAPK Signalling in Human Epidermis. BMC Systems Biology. doi: 10.1186/s12918-015-0187-6 The model was developed using a set the normalized-Hill differential equation framework, as specified by [Kraeutler, Soltis & Saucerman, (2002). BMC Systems Biology; doi: 10.1186/1752-0509-4-157]. This package includes: - MATLAB code containing the model definition, together with a script to perform non-linear least squares optimisation for a subset of parameters - python scripts which use libSBML to create an SBML representation of the model - SED-ML scripts which execute the SBML model under a range of conditions, produce output plots to recapitulate results shown in Cursons et al. (2015). -
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DEVSIM
TCAD Device Simulator
TCAD Device Simulator. DEVSIM is a semiconductor device simulation software, using the finite volume method. This software solves partial differential equations on a mesh. The Python interface allows the user to specify their own equations. -
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DEAPathways
Differential Expression Analysis for Pathways
This project contains the source code associated with the PLoS Computational Biology publication: "Differential Expression Analysis for Pathways". The paper text can be found here: http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002967 -
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SCaVis
Scientific Computation and Visualization Environment
SCaVis is an environment for scientific computation, data analysis and data visualization for scientists, engineers and students. The program is fully multiplatform (100% Java) and integrated with Java and a number of scripting languages: Jython (Python), Groovy, JRuby, BeanShell. SCaVis can be used to plot functions and data in 2D and 3D, perform statistical tests, data mining, numeric computations, function minimization, linear algebra, solving systems of linear and differential equations. Linear, non-linear and symbolic regression are also available. Elements of symbolic computations using Octave/Matlab scripting are supported. ... -
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TIDES
Taylor series Integrator for Differential Equations
Taylor series Integrator for Differential EquationS. This software is developed by Profs. A. Abad, R. Barrio, F. Blesa and M. Rodriguez, (GME, University of Zaragoza, Spain). It consists on a C (Fortran) library, libTIDES, and a Mathematica package, MathTIDES. (MathTIDES requires Mathematica version >= 7.0) . Basic references: * A. Abad, R. Barrio, F. Blesa, M. Rodriguez, 2012. Algorithm 924: TIDES, a Taylor series Integrator for Differential EquationS, ACM TOMS. 39, no. 1, art. 5.... -
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Python Quadratic Formula Solver
This is a Script that I made in Python to find the roots of a line
The script will find the roots of a line equation using the quadratic formula, whether it be real or imaginary. This script is nothing extraordinary I just put it up so someone trying to do something similar with imaginary numbers could use the code as reference. -
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VisualMathEditor
LaTeX, AscciMath and MathML editor developed in Javascript and HTML
...VisualMathEditor is a LaTeX, AsciiMath and MathML editor developed in Javascript and HTML. It operates independently on the web or locally. It has many features and menus that help the equation-entry and allow their posting and backup. Formulas : - math physics symbols - operation symbols - logical symbols - arrows symbols - relation symbols - bracket symbols - differential symbols - functions symbols - integral symbols - matrix symbols - sqrt & frac symbols - sub & sup symbols - sum & prod symbols - greek characters -
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SunlightDPD
Open source codes related to dissipative particle dynamics
SunlightDPD provides a home for open source codes related to the dissipative particle dynamics (DPD) simulation method. Currently the file release contains the HNC integral equation code. -
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abc-sde
approximate Bayesian computation for stochastic differential equations
A MATLAB toolbox for approximate Bayesian computation (ABC) in stochastic differential equation models. It performs approximate Bayesian computation for stochastic models having latent dynamics defined by stochastic differential equations (SDEs) and not limited to the "state-space" modelling framework. Both one- and multi-dimensional SDE systems are supported and partially observed systems are easily accommodated. -
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The DetStoch package offers the user two different methods to compute chemical reactions: Deterministic and Stochastic approaches. It allows the user to play with an intuitive GUI framework and compute the evolution rates of the chemical reactions with the different methods available. The results are displayed in graphical plots of the species concentration over the time. The package is designed to solve any of the following reactions by either one of the two approaches...
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A module containing python wrappers for the SUite of Non-linear DIfferential/ALgebraic Solvers (SUNDIALS), using ctypes.
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lequation
cross platform latex-to-bitmap-to-clipboard gui
L(atex)equation aims to be the simplest latex to bitmap converter there is. Its goals are: simple gui, simple install, mac + windows + ubuntu binaries and it just should work. -
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Mathemapy
A Python calculator program
Mathemapy is a feature-rich calculator made in Python. It can do multiple types of division, solve equations, expand equations and more. -
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ImmunoSym
A Population Dynamics Analysis for Immune Cell Interactions
...A Simulation for Immune Cell Interactions where we study the dynamics of a model that describes the competitive interaction between Antigen Presenting Cells (APC) and Adaptative T Cells. To analyse this model we have used two different mathematical approaches. With Ordinary differential equation (ODEs) and implementing the Stochastic Simulation Algorithm (SSA Gillespie Algorithm). -
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Electromagnetic cloaking
This Matlab code simulates the electromagnetic cloaking
This Matlab code with the finite element method based Partial Differential Equation Toolbox calculates and simulates the electromagnetic field, when a scatterer (copper) object is cloaked with transformation optics designed metamaterial. This electromagnetic cloaking effect can be studied and demonstrated with this program. The code includes two source type (finite length line source and point source), and two sets of metamaterial parameters (exact and reduced metamaterial parameters). ... -
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cancer_dynamics
Cancer Dynamics web
Website that shows the dynamics of a tumor by solving a system of ordinary differential equations. The results are two kind of graph images, and a gif file, being all of them available for download as a compressed file. -
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A language and a compiler for the solution of differential equations (ODE). Both lumped and distributed variables (PDE) will be possible. The ability to solve DAEs is a long term goal. The compiler generates a Python program that does the computation.
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Feel++ (formerly known as Life) is a C++ library for partial differential equation solves using generalized Galerkin methods i.e. fem, hp/fem, spectral methods.
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Tracefrog is a program that gives you the real time web page's update. You can track the web pages you interested for any web sites with any part. (no matter it provides RSS or not).
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Sempy is a Python package for the solution of partial differential equations using the spectral element method.
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Charybdis is a Python-driven set of applications for solving partial differential equations on irregular domains.
