Search Results for "gnu science" - Page 26
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Showing 5827 open source projects for "gnu science"
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Effectopedia is open knowledge aggregation and collaboration tool that provides a means of describing adverse outcome pathways in encyclopedic manner.
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Fudaa
https://gitlab.com/fudaa
Official site: https://fudaa-project.atlassian.net/wiki/spaces/FUDAA/overview Sources moved to GitLab: https://gitlab.com/fudaa -
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De_Lux
Deconvolution of luminescence cross-talk in microplate reader data
An algorithm to deconvolve the luminescence cross-talk in high-throughput gene expression profiling to recover the true luminescence activity of a microplate. -
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Jadex is a Belief Desire Intention (BDI) reasoning engine that allows for programming intelligent software agents in XML and Java. The resoning engine is very flexible.
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cocolib / light field suite
CUDA library for continuous optimization and light field analysis
Library for continuous convex optimization in image analysis, together with a command line tool and Matlab interface. Implements several recent algorithms for inverse problems and image segmentation with total variation regularizers and vectorial multilabel transition costs. Also included is a suite for variational light field analysis, which ties into the HCI light field benchmark set and givens reference implementations for a number of our recently published algorithms. *** NOTE: ... -
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PyTom
http://www.sciencedirect.com/science/article/pii/S1047847711003492
PyTom is a toolbox developed for interpreting cryo electron tomography data. All steps from reconstruction, localization, alignment and classification are covered with standard and improved methods. Please sign up to our mailing list to keep up with the most recent updates and versions. -
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lottie vectors
Create, display and process 2D vectors in a 3D window.
Lottie Vectors is an application for Matlab that alows you to do some pretty neat things -with vectors. More exactly -displaying them in ways that hopefully will allow you to explore and better understand your vector data. The basic idea is simple, take a vector defined in one of a few different types of data formats and map it on the screen. Add another vector and you start to form a 'route'. Each route or position vector can be accompanied with a 'force' vector. This can be used to... -
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finds exact gain, directivity and input impedance of Yagi or log-periodic antennas (planar symmetric array of cylindrical dipoles, many driven elements) for a range of specified frequencies, integrates 2D for segments on the same element, moment method
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Simultra
Multiagent simulator of road traffic in Qt/C++ and OpenStreetMap.
Simultra is an open-source, hybrid road traffic simulator designed to handle large roadmaps in real-time. It combines microscopic and mesoscopic simulations into one multiagent hybrid simulator. The large-scale maps are modelled mesoscopically in real-time, and the complex traffic interactions benefit from detailed agent-based microscopic simulations. To resolve the concurrency issues within the maps representation and the meso-micro transitions, Simultra combines an event-based mesoscopic... -
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Woda, the Web Oriented Database
Mature SGBD in Perl with a web interface
WODA is a semi-relational database for beginners to work on data and to learn database basis. With web-based GUI and CLI. Currently in rewrite using Bootstrap for web UI. Built with beginners in mind, it is far easier than any other tool I know, while remaining powerful for advanced users (Perl langage is directly available). Databases can be defined, maintained, added-to, modified, and queried entirely through the web interface without programming. It comes from the 90's and thus is... -
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ATTENTION: For more info and latest version, refer to https://github.com/estigma88/jdhtuq. jDHTUQ is a peer-to-peer DHT system based in Chord algorithm, but built like API to generalize the implementation of peer-to-peer DHT systems. jDHTUQ have two fundamental services , put and get of resource.
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YFitter
Fitting Y chromosome haplogroups by maximum likelihood
Yfitter is a program for assigning Y chromosome haplogroups to individuals sequenced at low coverage. It is designed to be used in a samtools/bcftools pipeline. Yfitter also supports haplogrouping using chip genotype data. -
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A package for computations with finite automata (rooted tree automorphisms) for the GAP system, http://www.gap-system.org.
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A Suite of Programs implementing a fast approach to the Debye Function Analysis (DFA) of powder diffraction data from nanocrystalline and/or non-ordered materials. See J. Appl. Cryst. 2015, 48, 2026-2032
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CIF2Cell
Generating cells for electronic structure calculations from CIF files
CIF2Cell is a tool to generate the geometrical setup for various electronic structure codes from a CIF (Crystallographic Information Framework) file. The program currently supports output for a number of popular electronic structure programs, including ABINIT, ASE, CASTEP, CP2K, CPMD, CRYSTAL09, Elk, EMTO, Exciting, Fleur, FHI-aims, Hutsepot, MOPAC, Quantum Espresso, RSPt, Siesta, SPR-KKR, VASP. Also exports some related formats like .coo, .cfg and .xyz-files. The program has been published... -
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Lightweight ext4 filesystem library
ext2/3/4 library for microcontrollers
Code is also available on github: https://github.com/gkostka/lwext4 Feel free to contact me: kostka.grzegorz@gmail.com -
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SparesPOP is a MATLAB implementation of a sparse semidefinite programming (SDP) relaxation method proposed for polynomial optimization problems (POPs). Please send a message to kojima-spop@is.titech.ac.jp if you have any question and/or request. We also release SparsePOPC++ and SparsePOPC++-windows. Both implementations are SparsePOP which does not use MATLAB, but only C++. In particular, SparsePOPC++-windows contains a binary file which works on Windows, and does not require to compile.
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GILIB
GILIB Large Integer Arithmetic Library
A large integer arithmetic library written in plain C. -
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jCOLIBRI: an object-oriented framework in Java for building Case-Based Reasoning (CBR) systems. Supports Textual-CBR, Knowledge Intensive CBR with Description Logics reasoning through Ontologies, Web interfaces, evaluation of the generated applications,
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JLibModbus - Java Modbus Library
A modbus library implemented in Java.
JLibModbus is an implementation of the Modbus protocol v1.1b in java language. The library supports the most popular communication libraries (jssc, rxtx, jSerialComm, purejavacomm, java comm api); Maven dependency: <dependency> <groupId>com.intelligt.modbus</groupId> <artifactId>jlibmodbus</artifactId> <version>1.2.9.7</version> </dependency> Implemented MODBUS functions: 0x01 Read Coils 0x02 Read Discrete Inputs 0x03 Read Holding Registers 0x04 Read Input... -
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OpenGrowth
OpenGrowth is a program which constructs de novo ligands for proteins.
OpenGrowth is a research program which grows new ligands in proteins by connecting small organic fragments. The details can be found in the original publication "OpenGrowth: an automated and rational algorithm for finding new protein ligands" (J. Med. Chem., http://dx.doi.org/10.1021/acs.jmedchem.5b00886). To use OpenGrowth, you will need OpenGrowth_1.0.zip and Resources_1.0.2.zip that can be found by clicking on the Files menu in the horizontal bar at the top... -
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TIM
A raytracer for forbidden optics
*** TIM's (now Dr TIM's) source code has moved to https://github.com/jkcuk/Dr-TIM *** TIM is a raytracer that was originally developed to simulate optical components called METATOYs, but it has since then developed into something much more general. Amongst other things, TIM can also calculate random-dot stereograms and anaglyphs and visualise ray trajectories. -
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An R package for metrology. metRology provides classes and calculation and plotting functions for metrology applications, including measurement uncertainty estimation and (eventually) inter-laboratory metrology comparison studies.
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DICOM Image Reader
A minimal Medical application to read and view DICOM (dcm) image file
Dicom Image Reader is opensource medical image viewer built with JavaScript, HTML5, NodeJS and Electron framework. It can load data in DICOM format (single image dcm) and provides standard tools for its manipulation such as contrast, zoom, drag, possibility to draw regions on top of the image and imaging filters such as threshold and sharpening. It is based DWV JavaScript opensource library. =============== Requirements: - Processor: Intel Pentium 4 processor or later that's SSE2... -
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GDL - GNU Data Language, a free IDL (Interactive Data Language, see http://ittvis.com/idl/) compatible incremental compiler.
