Search Results for "parallel" - Page 22
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Showing 924 open source projects for "parallel"
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SWAP-Assembler
A scalable and fully parallelized genome assembler
...Experimental results showed that SWAP-Assembler is the fastest and most efficient assemblers ever, it can generated contigs with highest accuracy over all five selected assemblers and longest contig N50 in all selected parallel assemblers. Specially, in the scalability test, SWAP-Assembler can scales up to 1024 cores when processing Fish and Yanhuang dataset, and finishes the assembly work in only 15 and 29 minutes respecitively -
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ASTRA Tomography Toolbox
A high-performance GPU MATLAB toolbox for 2D and 3D tomography
NB: The ASTRA Tomography Toolbox is now hosted at http://www.astra-toolbox.com/ The ASTRA Tomography Toolbox is a MATLAB toolbox based on high-performance GPU primitives for 2D and 3D tomography, developed jointly by the ASTRA-Vision Lab research group at the University of Antwerp and CWI, Amsterdam. It supports 2D parallel and fan beam geometries, and 3D parallel and cone beam. All of them have highly flexible source/detector positioning. A large number of 2D and 3D algorithms are available, including FBP, SIRT, SART, CGLS. The basic forward and backward projection operations are GPU-accelerated, and directly callable from MATLAB to enable building new algorithms. -
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ParallelAccelerator.jl
ParallelAccelerator package, part of the High Performance Scripting
...ParallelAccelerator compiles these parts of the program to fast native code. It automatically eliminates overheads such as array bounds checking when it is safe to do so. It also parallelizes and vectorizes many data-parallel operations. ParallelAccelerator is part of the High Performance Scripting (HPS) project at Intel Labs. -
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SAT-Assembler
Scalable and accurate targeted gene assembly for large-scale NGS data
...It recovers genes from gene families of particular interest to biologists with high coverage, low chimera rate, and extremely low memory usage compared with exiting gene assembly tools. Moreover, it is naturally compatible with parallel computing platforms. -
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Robot Framework FTP Library
FTP client for Robot Framework
SOURCE CODE MOVED TO https://github.com/kowalpy/Robot-Framework-FTP-Library . NEW RELEASES WILL APPEAR ONLY AT GITHUB AND PYPI. This Python library makes it possible to test or use FTP server using Robot Framework keywords. Together with the library, there are also available project example and keywords documentation created by libdoc. This sourceforge webpage is linked from http://robotframework.org/#test-libraries as external library so it can be considered as the official Robot... -
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Selendroid
Test automate native or hybrid Android apps and the mobile web
...Tests are written using the Selenium 2 client API. Selendroid can be used on emulators and real devices and can be integrated as a node into the Selenium Grid for scaling and parallel testing. Selendroid can be extended at runtime with your own extensions. Selendroid can interact with multiple Android devices (emulators or hardware devices) at the same time. UI elements can be found in different locator types. Same concept for automating native or hybrid apps. No modification of the app under test is required in order to automate it. ... -
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Folder
Toolbox for modelling deformation in layered media in 2D
Folder is a tool to simulate and analyse the development of structures in mechanically layered media during layer parallel shortening or extension. It includes a graphical user interface that allows for easy designing of complex geometrical models, defining material parameters (including linear and non-linear rheology), and specifying type and amount of deformation. It also includes a range of features that facilitate the visualization and examination of various relevant quantities e.g. velocities, stress, rate of deformation, pressure, and finite strain. ... -
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Bat2015
Bachelor of Science (Informatik)
...With a focus on the MILP methods we implement a load balancing and speed up the solving process in a multiplicative way. Sometimes we have super-linear speedup with a small set of hardware. With a splitting of problems, parallel computing and distributing the actual best solution to all running processes we solve CBP much faster than a sequential processing can do. -
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ClockSimpleJEE
Sample simplejee code, advanced junit test usage
This is the pure MVC lightweight framework. 10 times speed and limited filesize. Login: EmpID:160208 Password:mala We have junit test parallel system, you can use production database and test database at same time -
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HLearn
Homomorphic machine learning
HLearn is a Haskell-based machine learning library focused on composability, algebraic structure, and performance. It provides a functional approach to building machine learning algorithms by leveraging algebraic properties such as monoids and groups. This allows for parallel, incremental, and distributed computation in a mathematically consistent way. HLearn aims to provide implementations of common algorithms like k-means, naive Bayes, and others while maintaining the expressiveness and safety of the Haskell language. -
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Polaris CFD
Aerodynamics simulations based on gas kinetics
Polaris CFD is a complete CFD software suite for Aerodynamics simulations created by Alta Dynamics. It is validated to provided accurate results for both internal and external flow problems. Its viewer is built on ParaView for pre and post processing. -
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Python Control Systems Library
Feedback control system analysis and design
The Python Control Systems Library, python-control, is a python module that implements basic operations for analysis and design of feedback control systems. This homepage for this project is at http://python-control.org and the code base in maintained at https://github.com/python-control/python-control. Information on this page is out of date, but left here for posterity. -
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Osman Arabic Text Readability
Open Source tool for Arabic text readability
...All the readability metrics mentioned in Section \ref{calcRead} are included within the open source code, they all work with vocalised and non-vocalised text but based our results presented here we recommend adding the diacritics in by using the addTashkeel() method. See the files sections for the vocalised version of UN Arabic English parallel paragraphs. -
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Handy TCP/IP Server/Client Tools
Various TCP/IP servers, clients and network management tools
IPtools is an all in one package that includes various TCP/IP tools. Server: - FTP - TFTP - Syslog - Web - Remote Command - General UDP server - Multicast server Client utilities: - Multicast client - TFTP client Starting on version 0.2.0, a powerful network connection tools UBridge is added, it can bridge: - VXLAN (newly released) - UDP sessions - NIC card of the PC - Connections to Cisco Router Simulator "GNS3/dynamips" and H3C Router Simulator... -
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XSS-Scanner
Powerful XSS Scanner based on Selenium Web Driver
...XSS scanner walks through all reachable pages of your web-site and checks all forms that can be potentially vulnerable. XSS-Scanner is a multi-threading app that works in parallel in several browser windows to save time and improve efficiency. After working, it creates a nice web page with a report of a test result. This app is absolutely free XSS Scanner, based on Selenium Web Driver. It scans directly in your browser. All you need is FireFox with FireFoxDriver (usually it is built-in). Here you can find a self-sufficient source, feel free to use and extend it if needed: https://github.com/pashna/XSS-scanner To check vulnerabilities, XSS-scanner uses a list of known XSS-injection provided by owasp: https://www.owasp.org/index.php/XSS_Filter_Evasion_Cheat_Sheet Let's test and keep safe! -
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libCudaOptimize
A Parallel Optimization library with CUDA
LibCudaOptimize is a GPU-based open source library that allows you to run state-of-the-art bio-inspired optimization heuristics in parallel to optimize a fitness function, introduce a new optimization algorithm, or easily modify/extend existing ones. -
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Program jobman (Job Manager) glues executables written in different languages according to a given flow. The program can run executables with arguments in parallel (multiprocessed) or in loop or in any combination of them.
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rascanprint
Emulator based copier scanner and printer
...This library (the DLL), to work with the scanner (the default) through universal TWAIN-driver interface to the OS NT/2000/2003/XP/7/8, is designed for quick scanning without all the dialogues and acknowledgments are sent to the printing of the image and the parallel archiving of all scans in BMP or JPEG. A prerequisite for the development was the need to automate scanning and printing press of a button on the scanner (native software does not support it), due to geographically dispersed scanner and printer in order not to run back and forth, a kind of software emulation of the copier. DLL provides universal access for other applications, regardless of the language in the environment Win ALL. -
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This project aims to provide bit-parallel based string comparison tools on modern accelerators, as well as on common multi-core CPUs. Fundamentally, these tools are specified for biological data (i.e DNA, RNA sequences), however, they could also be extended to process other types of text data.
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VarScan
Variant detection in next-generation sequencing data
Variant detection in massively parallel sequencing. For one sample, calls SNPs, indels, and consensus genotypes. For tumor-normal pairs, further classifies each variant as Germline, Somatic, or LOH, and also detects somatic copy number changes. THE LATEST VERSION IS AVAILABLE ON GITHUB -
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Parallel
Parallel - Task parallelism in JS
Parallel is a JS library that enables you to run several tasks in parallel and also also take advantage of multi-core CPUs. Benchmarks: http://jsperf.com/parallel -
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jAgg
jAgg - Java Aggregation Operations
jAgg is a Java 5.0 API that supports “group by” operations on Lists of Java objects: aggregate operations such as count, sum, max, min, avg, and many more. It supports Super Aggregation: Rollups, Cube, and Grouping Sets. It supports analytic operations such as lag/lead and row number and more. It also allows custom aggregate and analytic operations. -
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PANET, a Cytoscape plugin is developed to efficiently analyze the robustness-related dynamics and feed-forward/feedback loop structures of biological networks. This is an advanced plugin of NetDS (http://netds.sourceforge.net/). We employed OpenCL library to make the time-consuming parts of NetDS are processed in parallel. Finally, in comparison to the original NetDS, PANET performed large-scale robustness calculation and feed-forward/feedback loop examination faster by several hundred times for a human signaling network with 1609 nodes and 5063 links.
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MPJ Express is an implementation of an MPI-like API—standardized by the Java Grande forum—used to write parallel Java applications, which can execute on a variety of parallel platforms ranging from multicore processors to compute clusters/clouds.
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JPOP is a pure java parallel optimization package based on the Optimization Java Package. It supports analytical gradients and Hessians for non-linear optimization. JPOP is based on uncmin in Fortran but employs java arrays and object oriented code.
