Search Results for "matlab linux" - Page 22
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Showing 942 open source projects for "matlab linux"
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PlaTypUS
Plasmodium Typing Utility Software
The goal of PlaTypUS is to establish a unified Plasmodium whole genome analysis tool, that aligns short read sequences in an agreed upon manner, with many quality control steps, and calls both SNVs and CNVs in a community agreed standard way. We also seek to provide this analysis in a stand-alone graphic user interface so that labs around the world can analyze their own whole genome sequencing data, rather than relying on outside institutes. -
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Software for automated acquisition and analysis of paleomagnetic and rock magnetic data using the RAPID System.
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A Matlab toolbox for calibrating the Kinect Sensor. It provides functions to jointly calibrate the depth sensor with a color camera as well as to generate a depth map for the color image and reproject the points in metric coordinates.
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Nonlocal and Gradient Elasticity
Assessment of high order one-dimensional approximation schemes
These Matlab scripts illustrate the numerical solution of two one-dimensional tensile rods equipped with integro-differential and strain-gradient constitutive laws by means of classical Hermitian and Lagrangian finite element discretizations, B-spline finite element discretizations and C∞ generalized finite element discretizations. Reference M. Malagù, E. Benvenuti, C. A. Duarte, and A. Simone. One-dimensional nonlocal and gradient elasticity: Assessment of high order approximation... -
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TrackArt
GUI for diffusion simulation and SMT data analysis
TrackArt is a simple MATLAB GUI for single particle tracking data analysis and simulation. -
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OpenNEC is an open-source program based on the NEC2 core. NEC2 is a method-of-moments simulation and analysis tool for antennas and conductive structures such as metal towers. The current goal of the project is to recode the NEC2 core from ForTran into Octave and Matlab for cross platform use as a simulation and analysis tool with the powerful graphics and mathematical capabilities of those programs.
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Elementary flux mode (EM) analysis is an important tool in the constraint-based analysis of genome-scale metabolic networks. CEFMISTR is a Matlab tool for enumerating EMs with one or two predefined reactions.
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octave-ms
Collection of routines for manipulation with mass spectrometry data
octave-ms is a collection of IO routines for manipulation with mass spectrometry datasets for octave users. It can handle variety of MS storage file formats including MGF, DTA, PKL, MZXML, MZDATA and MZML, converts MS data from one format to another, extract scans from MS datasets. Combined with octave statistical packages, it can be easy implemented to perform stat tests on various parameters of spectrum. It requires working knowledge in Octave/Matlab. -
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SPE Toolbox
MatLab functions for reading WinView/WinSpec .spe files
This toolbox is a collection of MatLab functions for reading WinView/WinSpec files (.spe extension) directly to MatLab. It provides functions for reading full header from file into a structure, reading frames into matrices, and reading pixel values across all frames. You can use these functions to analyse and process experiment data stored in .spe files in MatLab, and to write functions to export .spe files to animated GIFs for use in presentations. Also includes simple MatLab application... -
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IRIS Toolbox Project
I Rest, IRIS Solves
IRIS is a Matlab(T) based toolbox for macroeconomic modeling and forecasting. -
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FAUST2
Formal Abstractions of Uncountable-STate STochastic processes
FAUST2 is a software tool that generates formal abstractions of (possibly non-deterministic) discrete-time Markov processes (dtMP) defined over uncountable (continuous) state spaces. A dtMP model is specified in MATLAB and abstracted as a finite-state Markov chain or Markov decision processes. The abstraction procedure runs in MATLAB and employs parallel computations and fast manipulations based on vector calculus. The abstract model is formally put in relationship with the concrete dtMP... -
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GridMat
GridMat is a Matlab/Simulink tool box for GridLAB-D
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NetGames
MATLAB tool for network formation games modeling and visualization
A toolbox for network formation games researches. Currently focused on game theoretic topology formation in wireless ad hoc networks. Additionally includes functions for Granovetter threshold model of social activity. The project still under development -
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FluxModules
Module Computation for Metabolic Networks
Genome Scale Metabolic Networks are complex systems, Modules help to break them down and hence ease understanding and algorithmic complexity. FluxModules is a toolbox with code for module detection and module visualization. -
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Osmotic Pressurization Dynamics
Calculates dynamics of osmosis-based pressure generation using PEG.
This MATLAB script calculates pressure as a function of time inside a submerged membrane-bound compartment containing an aqueous PEG solution as an osmotic driver. It can also be used to calculate a membrane's hydraulic permeability by fitting experimental data. The model used accounts for the dilution effects caused by the compartment's expansion. All of this project's resources can be found in the "Files" section. -
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A Matlab based project for tracking cell nuclei in 3D space over time from live imaging data. (Sample images and lineage data are available under "Files".)
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MATLABStarter
Dynamically creates MATLAB path and updates code repositories
A startup function for MATLAB that dynamically adds MATLAB m files, Java folders and .jar archives in user-defined folders and optionally updates any subversion or git working copies found. -
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IPRiT
Image Processing Ridge Tracker
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FibroQuant
Fibrosis quantifier
Application developed using Matlab to measure the areas of slides stained using Masson Trichrome staining. The application can import tiff and Aperio svs images. -
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illustrative_progs
collection of illustrative programs:small games, simulators: C, Matlab
a collection of small and medium-sized simulation programs that I made explicitely for dydactic and/or documentation purposes. Browse the files, don't click on widnload because there are multiple zips!! All are related to rigidbody dynamics used to make vehicle simulators in the simplest way. Other types of programs may figure too: Snake or Tetris in C for showing the C programming style opted for the other, more specific programs. Possibly this is a link for supplying material to some... -
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Systems Glycobiology
Glycosylation Network Analysis Toolbox (GNAT)
GNAT is an open source, platform-independent MATLAB based toolbox. It is written in MATLAB and Java. It has been tested in Windows (Windows 7), Linux (Ubuntu), and Mac OS (X Lion) platforms. The original GNAT package (file GNAT.zip) provides functions for reading, writing, manipulation, visualization and simulation of glycan structures and glycosylation reaction networks (citation [1]). -
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HMM Speech Recognition in Matlab
A speech recognition system using Matlab/Simulink/Stateflow.
This project provide hidden Markov model speech recognition system by using Matlab/Simulink/Stateflow. -
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Matlab Flocking Walkers (FLOW)
Flocking walkers simulation in Matlab
The Matlab FLOW (FLOcking Walkers) toolbox has been created to facilitate experimentation with groups of "actors" who move (in the two-dimensional plane or in the three-dimensional space) interacting with each other. (We have previously published an older FLOW project, implemented in DarkBasic. However we recommend the current, Matlab+Panda3d version.) The FLOW distribution consists of five files: 1. FLOW2D.zip is the 2D simulator and related files. 2. FLOW2DVis.zip contains the... -
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LNLS-MML
MML and AT files for LNLS UVX and Sirius Rings - Moved to GitHub
MML and AT files for LNLS UVX and Sirius Rings - Moved to GitHub
