Search Results for "multiple sequence alignment" - Page 2
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Showing 231 open source projects for "multiple sequence alignment"
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Profile Data
Analyze computation-communication overlap in V3/R1
...The repository contains JSON trace files like train.json, prefill.json, decode.json, and associated assets. Users can load them into tools like Chrome tracing to inspect GPU idle times, overlapping operations, and scheduling alignment. The idea is to bring transparency to internal efficiency tradeoffs, enabling researchers to reproduce, analyze, or improve on DeepSeek’s parallelism strategies. The README explains how trace data corresponds to forward/backward chunks, settings (e.g. EP64, TP1, 4K sequence length), and notes that pipeline communication is excluded for simplicity. -
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Automa
A chrome extension for automating your browser by connecting blocks
Automa is a browser extension for browser automation. From auto-fill forms, doing a repetitive task, taking a screenshot, to scraping data of the website, it's up to you what you want to do with this extension. Automa has provided various kinds of blocks that will help you do automation, and all you need to do is connect them. Want your workflow to run every day or every time you visit a specific website? You can set the workflow trigger on the trigger block. Try a workflow from the... -
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Claude Code Video Vision
Give Claude the ability to watch and understand videos
Claude Video Vision is a plugin designed for Claude Code that enables large language models to process and understand video content by transforming it into multimodal inputs the model can reason over. Instead of attempting to directly interpret raw video streams, the system extracts key frames using tools like ffmpeg and processes audio through transcription engines, converting both visual and auditory signals into structured inputs for the model. The result is a perception layer that feeds... -
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FlashKDA
High-performance Kimi Delta Attention kernels
FlashKDA is an open-source library of high-performance CUDA kernels for Kimi Delta Attention, implemented on NVIDIA CUTLASS. It is intended to accelerate the forward pass used by KDA-based language models on modern NVIDIA GPUs. The package integrates with flash-linear-attention and can be selected automatically as the backend for chunk_kda during inference. It supports recurrent state input and output, variable-length batches, internal gating, query-key normalization, and beta activation.... -
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Tiktoken
tiktoken is a fast BPE tokeniser for use with OpenAI's models
tiktoken is a high-performance, tokenizer library (based on byte-pair encoding, BPE) designed for use with OpenAI’s models. It handles encoding and decoding text to token IDs efficiently, with minimal overhead. Because tokenization is a fundamental step in preparing text for models, tiktoken is optimized for speed, memory, and correctness in model contexts (e.g. matching OpenAI’s internal tokenization). The repo supports multiple encodings (e.g. “cl100k_base”) and lets users switch encoding... -
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Cpp17
Chinese translation of C++17 The Complete Guide
...It also covers enhancements to existing STL components, new library utilities, and advanced topics like polymorphic memory resources (PMR), alignment, and generic programming improvements. -
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BoxMOT
Pluggable SOTA multi-object tracking modules for segmentation
BoxMOT is an open-source framework designed to provide modular implementations of state-of-the-art multi-object tracking algorithms for computer vision applications. The project focuses on the tracking-by-detection paradigm, where objects detected by vision models are continuously tracked across frames in a video sequence. It provides a pluggable architecture that allows developers to combine different object detectors with multiple tracking algorithms without modifying the core codebase. The framework supports integration with detection, segmentation, and pose estimation models that produce bounding box outputs. It also includes evaluation tools and benchmarking pipelines that allow researchers to test tracking performance on standard datasets such as MOT17 and MOT20. ... -
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frame.js
JavaScript Sequence Editor
frame.js is a tiny utility for orchestrating frame-based animations with requestAnimationFrame while keeping code clean and predictable. It abstracts the boilerplate of setting up a render loop, tracking elapsed time, and updating callbacks at the right cadence. By providing a simple lifecycle—start, stop, tick—it encourages separation between state updates and rendering, which is essential for smooth visuals. The library aims to be unobtrusive: you can drop it into demos or prototypes... -
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HivisionIDPhoto
HivisionIDPhotos: a lightweight and efficient AI ID photos tools
HivisionIDPhotos is an open-source AI project designed to automatically generate professional ID photographs from ordinary portrait images. The system uses computer vision and machine learning models to detect faces, segment the subject from the background, and produce standardized identification photos suitable for official documents. It is designed as a lightweight tool that can perform inference offline and run efficiently on CPUs without requiring powerful GPUs. The software analyzes... -
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Fish Speech
SOTA Open Source TTS
...The repository hosts the code and tooling for training, fine-tuning, and serving high-quality TTS, while the current flagship models (OpenAudio-S1 and S1-mini) are distributed via Fish Audio’s playground and Hugging Face. The models are evaluated with Seed TTS metrics and achieve exceptionally low word and character error rates, indicating strong intelligibility and alignment between text and audio. Fish Speech emphasizes expressive and controllable voices: it supports a long list of emotion tags, tone markers, and special audio effect markers that can be embedded in the text to drive prosody and vocal style, from basic emotions to nuanced states like sarcastic, conciliative, or hysterical. The system is multilingual and cross-lingual, handling multiple languages in a single input without explicit phoneme markup, and is trained on large-scale datasets. -
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Chronos Forecasting
Pretrained (Language) Models for Probabilistic Time Series Forecasting
Chronos is a family of pretrained time series forecasting models based on language model architectures. A time series is transformed into a sequence of tokens via scaling and quantization, and a language model is trained on these tokens using the cross-entropy loss. Once trained, probabilistic forecasts are obtained by sampling multiple future trajectories given the historical context. Chronos models have been trained on a large corpus of publicly available time series data, as well as synthetic data generated using Gaussian processes. -
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CyberPPT
A Codex Skill for generating high-density, editable PowerPoints
...Users select from eight fixed visual systems, after which the skill plans each slide’s hierarchy, grid, charts, palette, and information density. Image-generation blueprints guide reconstruction while native text, shapes, tables, charts, and vectors preserve core editability. Multiple quality gates inspect structure, visuals, overflow, spatial alignment, curves, and editable elements. Delivery includes the PPTX, rendered previews, manifests, and QA results, with failed hard gates blocking completion. -
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LLMSurvey
A Survey of Large Language Models
...The repository organizes hundreds of research papers into thematic sections that reflect the main areas of LLM research, including model architectures, training strategies, evaluation benchmarks, alignment techniques, and downstream applications. By structuring the literature in a navigable format, LLMSurvey allows researchers and practitioners to quickly explore important publications in the field without manually searching through multiple databases. -
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Transcoder
Hardware-accelerated video transcoding using Android MediaCodec APIs
Transcoder by DeepMedia is an AI-powered video-to-video speech translation engine that enables fully automated multilingual dubbing. Unlike traditional speech translation systems that rely on multi-stage pipelines, Transcoder directly translates one speaker’s video into another language while preserving facial expressions, lip-sync, and vocal identity. Designed for real-time use and production-grade pipelines, Transcoder combines advanced deep learning models with GPU acceleration to deliver... -
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JavaCV
Java interface to OpenCV, FFmpeg, and more
JavaCV uses wrappers from the JavaCPP Presets of commonly used libraries by researchers in the field of computer vision (OpenCV, FFmpeg, libdc1394, FlyCapture, Spinnaker, OpenKinect, librealsense, CL PS3 Eye Driver, videoInput, ARToolKitPlus, flandmark, Leptonica, and Tesseract) and provides utility classes to make their functionality easier to use on the Java platform, including Android. JavaCV also comes with hardware accelerated full-screen image display (CanvasFrame and GLCanvasFrame), easy-to-use methods to execute code in parallel on multiple cores (Parallel), user-friendly geometric and color calibration of cameras and projectors (GeometricCalibrator, ProCamGeometricCalibrator, ProCamColorCalibrator), detection and matching of feature points (ObjectFinder), a set of classes that implement direct image alignment of projector-camera systems (mainly GNImageAligner, ProjectiveTransformer, ProjectiveColorTransformer, ProCamTransformer, and ReflectanceInitializer), and more. -
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Talk to Figma MCP
AI bridge enabling Cursor agents to read and modify Figma designs
cursor-talk-to-figma-mcp is an open source integration that connects AI coding agents with Figma through the Model Context Protocol (MCP). It allows AI tools such as Cursor or other compatible agents to directly communicate with Figma documents and interact with design elements programmatically. Through this integration, an AI assistant can read the structure of a design, retrieve information about nodes or selections, and perform modifications to the layout or content.... -
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DreamO
A Unified Framework for Image Customization
DreamO is a unified, open-source framework from ByteDance for advanced image customization and generation that consolidates multiple “image manipulation” tasks into a single system, rather than requiring separate specialized models. Built on a diffusion-transformer (DiT) backbone, it supports a diverse set of tasks — including identity preservation, virtual “try-on” (e.g. clothing, accessories), style transfer, IP adaptation (objects/characters), and layout/condition-aware customizations —... -
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PKU Beaver
Constrained Value Alignment via Safe Reinforcement Learning
PKU Beaver is an open-source research project focused on improving the safety alignment of large language models through reinforcement learning from human feedback under explicit safety constraints. The framework introduces techniques that separate helpfulness and harmlessness signals during training, allowing models to optimize for useful responses while minimizing harmful behavior. To support this process, the project provides datasets containing human-labeled examples that encode both performance preferences and safety constraints across multiple dimensions. ... -
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nanochat
The best ChatGPT that $100 can buy
nanochat is a from-scratch, end-to-end “mini ChatGPT” that shows the entire path from raw text to a chatty web app in one small, dependency-lean codebase. The repository stitches together every stage of the lifecycle: tokenizer training, pretraining a Transformer on a large web corpus, mid-training on dialogue and multiple-choice tasks, supervised fine-tuning, optional reinforcement learning for alignment, and finally efficient inference with caching. Its north star is approachability and speed: you can boot a fresh GPU box and drive the whole pipeline via a single script, producing a usable chat model in hours and a clear markdown report of what happened. ... -
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VoxelMorph
Unsupervised Learning for Image Registration
...Once the model has been trained, it can rapidly compute the transformation required to register new image pairs, significantly reducing computational time compared to classical registration algorithms. The framework supports both supervised and unsupervised learning approaches and is commonly used in medical imaging applications such as MRI alignment, anatomical analysis, and longitudinal studies. -
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Hephaestus
Semi-Structured Agentic Framework. Workflows build themselves
Hephaestus is an open-source semi-structured agentic framework designed to orchestrate multiple AI agents working together on complex tasks. Instead of relying entirely on predefined workflows, the framework allows agents to dynamically create tasks as they explore a problem space. Developers define high-level phases such as analysis, implementation, and testing, while agents generate specific subtasks within those phases. The system continuously monitors agent behavior and task progression,... -
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Task Scheduler
Cooperative multitasking for Arduino, ESPx, STM32, nRF and more
Cooperative multitasking for Arduino, ESPx, STM32 and other microcontrollers. A lightweight implementation of cooperative multitasking (task scheduling). An easier alternative to preemptive programming and frameworks like FreeRTOS. You mostly do not need to worry about pitfalls of concurrent processing (races, deadlocks, livelocks, resource sharing, etc.). The fact of cooperative processing takes care of such issues by design. -
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Underscore.js
JavaScript's utility belt
Underscore.js is a JavaScript utility-library created by Jeremy Ashkenas that provides a broad set of functions for working with arrays, objects, functions, and other data types — essentially a “utility belt” for functional programming in JS. Instead of extending built-in objects or modifying prototypes, Underscore provides its helpers in a single _ namespace, enabling cross-browser support and consistent behaviour across environments. It offers map/filter/reduce, deep-cloning, templating,... -
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Claude Code Game Studios
Turn Claude Code into a full game dev studio
...It emphasizes automation in game development, allowing users to delegate tasks such as asset creation, gameplay logic, and system design to AI-driven processes. The project is built around the concept of agent-based development, where multiple AI components can collaborate or execute tasks in sequence. It supports integration with modern coding agent ecosystems, enabling users to run tasks in controlled environments and track progress. The system also reflects experimental approaches to creative coding, where AI is used not just for assistance but as an active participant in development. -
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CodeGen
Open-source model for program synthesis
CodeGen is a family of open-source large language models designed specifically for program synthesis and code generation tasks. Developed by Salesforce Research, the models are trained on large datasets containing both natural language and programming language content. This allows them to translate natural language descriptions into functional code across a variety of programming languages. CodeGen supports multi-turn program synthesis, meaning it can generate complex programs through a...
