Search Results for "multiple sequence alignment"
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Showing 22 open source projects for "multiple sequence alignment"
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PHP Snowflake
An ID Generator for PHP based on Snowflake Algorithm
...Snowflake is a network service that generates unique ID numbers at high scale with simple guarantees. If you want to generate unique IDs using the snowflake algorithm, you must ensure that sequence numbers generated within the same millisecond on the same node are unique. Based on this requirement, we have created this package which integrates multiple sequence number providers. -
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fzf
A command-line fuzzy finder
...(You can override the default command with FZF_DEFAULT_COMMAND). fzf by default starts in fullscreen mode, but you can make it start below the cursor with the height option. Unless otherwise specified, fzf starts in "extended-search mode" where you can type in multiple search terms delimited by spaces. Fuzzy completion for files and directories can be triggered if the word before the cursor ends with the trigger sequence, which is by default **. Fuzzy completion for PIDs is provided for the kill command. In this case, there is no trigger sequence. -
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Plaso
Super timeline all the things
Plaso (Plaso Langar Að Safna Öllu), or "super timeline all the things," is a Python-based engine designed for automatic creation of timelines in digital forensic investigations. It processes various log files and artifacts to generate a chronological sequence of events, aiding analysts in understanding system activities. -
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Git Interactive Rebase Tool
Native cross-platform full feature terminal-based sequence editor
Native cross-platform full feature terminal-based sequence editor for interactive rebase in Git 1.7.8+. Built and works on Linux, macOS, Windows and many others. Easily set the action to pick, squash, fixup, edit, reword and drop. Reorder the action list with a single key press. Change action and reorder multiple lines at once with visual mode. View the commit overview, and a full commit diff with a press of a key. -
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Node Thermal Printer
Node.js module for thermal printers command line printing
node-thermal-printer is a Node.js library that enables communication with thermal receipt printers using ESC/POS commands. It is designed for point-of-sale (POS) applications, allowing developers to generate receipts, barcodes, QR codes, and formatted text. -
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Task Scheduler
Cooperative multitasking for Arduino, ESPx, STM32, nRF and more
Cooperative multitasking for Arduino, ESPx, STM32 and other microcontrollers. A lightweight implementation of cooperative multitasking (task scheduling). An easier alternative to preemptive programming and frameworks like FreeRTOS. You mostly do not need to worry about pitfalls of concurrent processing (races, deadlocks, livelocks, resource sharing, etc.). The fact of cooperative processing takes care of such issues by design. -
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JavaCV
Java interface to OpenCV, FFmpeg, and more
JavaCV uses wrappers from the JavaCPP Presets of commonly used libraries by researchers in the field of computer vision (OpenCV, FFmpeg, libdc1394, FlyCapture, Spinnaker, OpenKinect, librealsense, CL PS3 Eye Driver, videoInput, ARToolKitPlus, flandmark, Leptonica, and Tesseract) and provides utility classes to make their functionality easier to use on the Java platform, including Android. JavaCV also comes with hardware accelerated full-screen image display (CanvasFrame and GLCanvasFrame), easy-to-use methods to execute code in parallel on multiple cores (Parallel), user-friendly geometric and color calibration of cameras and projectors (GeometricCalibrator, ProCamGeometricCalibrator, ProCamColorCalibrator), detection and matching of feature points (ObjectFinder), a set of classes that implement direct image alignment of projector-camera systems (mainly GNImageAligner, ProjectiveTransformer, ProjectiveColorTransformer, ProCamTransformer, and ReflectanceInitializer), and more. -
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Underscore.js
JavaScript's utility belt
Underscore.js is a JavaScript utility-library created by Jeremy Ashkenas that provides a broad set of functions for working with arrays, objects, functions, and other data types — essentially a “utility belt” for functional programming in JS. Instead of extending built-in objects or modifying prototypes, Underscore provides its helpers in a single _ namespace, enabling cross-browser support and consistent behaviour across environments. It offers map/filter/reduce, deep-cloning, templating,... -
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lint-staged
Run linters on git staged files
Run linters against staged git files and don't let anything slip into your code base! Linting makes more sense when run before committing your code. By doing so you can ensure no errors go into the repository and enforce code style. But running a lint process on a whole project is slow, and linting results can be irrelevant. Ultimately you only want to lint files that will be committed. This project contains a script that will run arbitrary shell tasks with a list of staged files as an... -
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gendasm
Generic Code-Seeking Diassembler with Fuzzy-Function Analyzer
...It will disassemble the code and follow through branches to assist in the separation of code and data. Its included Fuzzy Function Analyzer companion uses a DNA Sequence Alignment Algorithm to locate similar code in multiple binaries to facilitate reverse-engineering and/or code recovery. The original purpose of the Fuzzy Function Analyzer was to assist in code recovery where the source code for the current binaries got lost, yet the source code for an old binary was retained. The Fuzzy Function Analyzer allows you to match up known functions between the two binaries so you can concentrate on disassembling and reverse engineering the parts that are different and recover the code for the current binary that got lost. -
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Alphafold
Open source code for AlphaFold
This package provides an implementation of the inference pipeline of AlphaFold v2.0. This is a completely new model that was entered in CASP14 and published in Nature. For simplicity, we refer to this model as AlphaFold throughout the rest of this document. Any publication that discloses findings arising from using this source code or the model parameters should cite the AlphaFold paper. Please also refer to the Supplementary Information for a detailed description of the method. You can use... -
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Fairseq
Facebook AI Research Sequence-to-Sequence Toolkit written in Python
Fairseq(-py) is a sequence modeling toolkit that allows researchers and developers to train custom models for translation, summarization, language modeling and other text generation tasks. We provide reference implementations of various sequence modeling papers. Recent work by Microsoft and Google has shown that data parallel training can be made significantly more efficient by sharding the model parameters and optimizer state across data parallel workers. These ideas are encapsulated in the... -
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Augmentor.jl
A fast image augmentation library in Julia for machine learning
A fast library for increasing the number of training images by applying various transformations. Augmentor is a real-time image augmentation library designed to render the process of artificial dataset enlargement more convenient, less error prone, and easier to reproduce. It offers the user the ability to build a stochastic image-processing pipeline (or simply augmentation pipeline) using image operations as building blocks. In other words, an augmentation pipeline is little more but a... -
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m6811dis
M6811 Code-Seeking Disassembler
The M6811 Code-Seeking Disassembler is a command-line tool that lets you enter known starting vectors for a given code image for the 6811 micro. It will disassemble the code and follow through branches to assist in the separation of code and data. Its companion Fuzzy Function Analyzer uses DNA Sequence Alignment Algorithms to locate similar code in multiple binaries, facilitating reverse-engineering. Originally written to analyze code from GM automotive engine controllers, but is useful anywhere a 6811 micro is being used. Version 1.0 was written in Borland Pascal in April 1996, and updated to v1.2 in June 1999. It was later rewritten to C++ in July 1999 through Jan 2000. ... -
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Mousetrap
Simple library for handling keyboard shortcuts in Javascript
...Mousetrap has been tested and should work in Internet Explorer 6+, Safari, Firefox, and Chrome. The bind method is the main call you will be making. This will bind a specified keyboard command to a callback method. If you want to bind multiple key commands to the same callback you can pass in an array for the first argument. Mousetrap 1.4 introduced a generic mod helper which lets you set cross platform shortcuts. The sequence of keys feature was inspired by Gmail. Any keys separated by a space will be considered a sequence. If you type each key in order the final one in the sequence will trigger the callback. ... -
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M80AttributedLabel
Another attributed label using CoreText
M80AttributedLabel is a feature-rich UILabel alternative that supports rich text rendering with advanced formatting options. It allows embedding links, images, and custom text styling within a label, supporting complex layouts. -
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Keypress
A keyboard input capturing utility
Keypress is a JavaScript utility (Apache‑2.0) for defining keyboard combos, sequences, and custom modifiers. Popular in game development and interactive web apps, it supports keydown/keyup, multiple modifiers, sequence combinations, and offers ~9 KB footprint with zero dependencies. -
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Buckets
A complete, fully tested and documented data structure library
...Dictionaries map keys to values, each key can map to at most one value. A heap is a binary tree that maintains the heap property. Every node is less than or equal to each of its children. A linked list is a sequence of items arranged one after another. A multi dictionary is a special kind of dictionary that holds multiple values against each key. In a priority queue, each element is associated with a "priority", and elements are dequeued in the highest-priority-first order (the elements with the highest priority are dequeued first). -
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This tool helps you to reverse engineer UML Sequence Diagram for your java program at runtime. It works well with both complex java programs (that have multiple threads) and J2EE applications deployed on Application Servers.
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J3dPSV 1.0 is a graphical application package for viewing and modeling of three dimensional structures of protein structure, including multiple chain sequence table and a three-dimensional (3D) protein structure viewer.
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NeoBio is a Java class library of Computational Biology Algorithms. The current version consists mainly of pairwise sequence alignment algorithms such as the classical dynamic programming methods of Needleman-Wunsch and Smith-Waterman.
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cut2 is a command line tool for extracting sections of each line from a file or stdin. cut2 is designed to treat multiple delimiters in sequence as a single delimiter.
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