Search Results for "research" - Page 94
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Showing 15060 open source projects for "research"
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FusionCatcher
Somatic fusion-genes finder for RNA-seq data
FusionCatcher searches for novel/known somatic fusion genes, translocations, and chimeras in RNA-seq data (paired-end reads from Illumina NGS platforms like Solexa and HiSeq) from diseased samples. The aims of FusionCatcher are: - very good detection rate for finding candidate fusion genes, - very easy to use (i.e. no a priori knowledge of databases and bioinformatics is needed in order to run FusionCatcher), - very good detection of challenging fusion genes, like for example IGH... -
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Takin
Inelastic neutron scattering suite.
The main development repository can be found here: https://code.ill.fr/scientific-software/takin -
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FDMNES powered by sparse solvers
The sources and builds history of FDMNES project
The sources and builds history of FDMNES project (http://neel.cnrs.fr/spip.php?rubrique1007&lang=en ) with parallel sparse solvers moved to github: https://github.com/gudasergey/fdmnes -
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Mohist 1.20.1
Minecraft Forge Hybrid server implementing the Spigot
...By focusing on modular components and extensible design patterns, Tenet allows developers to create systems that can integrate with other Minecraft tools and frameworks. The architecture encourages experimentation with new networking, gameplay logic, or server extension mechanisms. Projects like Tenet often serve as research platforms where developers test new ideas about game server design, concurrency, and plugin systems. The codebase provides a foundation for building new tools or prototypes related to Minecraft infrastructure. -
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Tweety is a collection of various Java libraries that implement approaches to different areas of artificial intelligence. In particular, it provides a general interface layer for doing research and working with different knowledge representation formalisms such as classical logics, conditional logics, probabilistic logics, and argumentation. Furthermore, Tweety contains libraries for dealing with agents, multi-agent systems, and dialog systems for agents, as well as belief revision, preference reasoning, preference aggregation, and action languages. ...
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PyArmadillo
linear algebra library for Python
PyArmadillo - streamlined linear algebra library for Python, with emphasis on ease of use. Alternative to NumPy / SciPy. * Main page: https://pyarma.sourceforge.io * Documentation: https://pyarma.sourceforge.io/docs.html * Bug reports: https://pyarma.sourceforge.io/faq.html * Git repo: https://gitlab.com/jason-rumengan/pyarma -
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OpenAI Glow
Copy code in "Glow: Generative Flow with Invertible 1x1 Convolutions"
...Glow’s architecture is based on reversible layers and efficient flow operations, which allow large-scale training while keeping memory usage manageable. The repository provides training code, pretrained models, and scripts for generating samples or reproducing key results from the original research. Glow is primarily intended for researchers and practitioners exploring generative modeling, likelihood-based training, and interpretable deep learning systems. -
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Tahoe is a research-oriented platform for the development of numerical methods and models for the simulation of complex material behavior.
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An SNTP client for Virtual PC. It is for machines that do not have a sane time and a working hardware RTC. It synchronize the system time frequently with a nearby NTP server. It uses settimeofday(). It is based on RFC 1769 and RFC 1305.
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The Kinetic Simulation Algorithm Ontology (KiSAO; http://co.mbine.org/standards/kisao) is an ontology of algorithms for simulating and analyzing biological models, as well as the characteristics of these algorithms, their input parameters, and their outputs. In addition, KiSAO captures relationships among algorithms, their parameters, and their outputs. Development of KiSAO has moved to https://github.com/SED-ML/KiSAO/.
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Archive of Formal Proofs
A collection of machine-checkend mathematical proofs
The Archive of Formal Proofs is a collection of proof libraries, examples, and larger scientifc developments, mechanically checked in the theorem prover Isabelle. It is organized in the way of a scientific journal. Submissions are refereed. -
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...Final output barcodes can be used in identification of true variants with very low allele frequency less than or equal to 1% existing in liquid biopsy from cancers, quantitative transcriptome analysis to estimate accurate expression levels of genes or transcripts, and even single-cell sequencing of large cell populations. Operating system: Linux Programming language: C++ License: Non-Commercial Research Use Only
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SoDaRadio
SoDaRadio is a VHF/UHF all mode transceiver for the USRP
Moved to github: see https://kb1vc.github.io/SoDaRadio/ SoDaRadio is an allmode VHF/UHF SDR transceiver built for the Ettus Research USRP N2xx and B2xx software defined radio platforms. It is designed for use by amateur radio operators. It has been used as a general purpose receiver, and as an exciter/IF for microwave transverters. -
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gradslam
gradslam is an open source differentiable dense SLAM library
gradslam is an open-source framework providing differentiable building blocks for simultaneous localization and mapping (SLAM) systems. We enable the usage of dense SLAM subsystems from the comfort of PyTorch. The question of “representation” is central in the context of dense simultaneous localization and mapping (SLAM). Newer learning-based approaches have the potential to leverage data or task performance to directly inform the choice of representation. However, learning representations... -
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GeoSolver
A Python library for solving geometric constraint problems
GeoSolver is a Python library for solving geometric constraint problems. A graphical testing and demostration application, the Geometric Constraint Workbench is included with the software. -
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statTools
Command-line tools for simple statistics
statTools contains command-line tools for simple statistics -
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Gato (Graph Animation Toolbox): Animate graph algorithms for example for computing shortest paths, minimal spanning trees, maximum flows or maximal cardinality or weight matchings. Create your own animations using the Animated Data Structures (ADS).
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NLP Architect
A model library for exploring state-of-the-art deep learning
NLP Architect is an open-source Python library for exploring state-of-the-art deep learning topologies and techniques for optimizing Natural Language Processing and Natural Language Understanding neural networks. The library includes our past and ongoing NLP research and development efforts as part of Intel AI Lab. NLP Architect is designed to be flexible for adding new models, neural network components, data handling methods, and for easy training and running models. NLP Architect is a model-oriented library designed to showcase novel and different neural network optimizations. The library contains NLP/NLU-related models per task, different neural network topologies (which are used in models), procedures for simplifying workflows in the library, pre-defined data processors and dataset loaders and misc utilities. ... -
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Neural Networks Collection
Neural Networks Collection
This project implements in C++ a bunch of known Neural Networks. So far the project implements: LVQ in several variants, SOM in several variants, Hopfield network and Perceptron. Other neural network types are planned, but not implemented yet. The project can run in two modes: command line tool and Python 7.2 extension. Currently, Python version appears more functional, as it allows easy interaction with algorithms developed by other people. -
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tcptrace
tcptrace analyzes packet tcp connections and provides analysis
tcptrace is a tool written by Shawn Ostermann at Ohio University, for analysis of TCP dump files. It can take as input the files produced by several popular packet-capture programs, including tcpdump, snoop, etherpeek, HP Net Metrix, and WinDump. tcptrace can produce several different types of output containing information on each connection seen, such as elapsed time, bytes and segments sent and recieved, retransmissions, round trip times, window advertisements, throughput, and more. It can... -
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NOTE: NTFS-3G development has moved to GitHub. This project page exists for archival purposes only! For the latest NTFS-3G updates, please visit: https://github.com/tuxera/ntfs-3g The NTFS-3G driver is a safe read/write NTFS driver for Linux, Mac OS X, OpenSolaris, FreeBSD, NetBSD, QNX, Windows and Haiku, providing fast and POSIX handling of the Windows XP, Windows Server 2003, Windows 2000, Windows Vista and Windows 7 file system
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JDataCom
Stream manager
Create ports : TCP/UDP/Terminal/File/RS232(txrx)/DB/System/Bluetooth/JNA/ETH(jpcap)/Sound. Simply configure with GUI/SFC XML file/CLI. Display, modify, replay, store (tcpdump), decode flow of bytes or objects. Implement : loop/echo/paddings/... and delai/DB2XML/Stacks/Matrix/... management. Stream conversations with a dynamic packet analyse. -
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MS2Compound
Identification of custom metabolites from metabolomics data
...The tool allows use of custom database for the identification of compounds. The tool has been developed and maintained by Center for Systems Biology and Molecular Medicine (http://csbmm.yenepoya.res.in/), Yenepoya Research Centre, Yenepoya (Deemed to be University). -
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OpenFrames
Real-time interactive 3D graphics API for scientific simulations
OpenFrames has moved its primary development repository to GitHub! Everything else will follow. Get it at https://github.com/ravidavi/OpenFrames/wiki OpenFrames is an Application Programming Interface (API) that allows developers to provides the ability to add interactive 3D graphics to any scientific simulation. A simulation developer can use OpenFrames to specify what they want to visualize, without having to know any details of computer graphics programming. OpenFrames is currently...
