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Hierarchical logging handlers/appenders for java.util.logging and org.apache.log4j. For given simple pattern and id, it can create a structure of log consist of directories and files by dividing a large log into smaller files grouped by date and id.
xcave is a wine cellar manager. I mean a software to allow you to view and manage the contents of a wine cellar not a piece of software to allow you to execute ms windows soft on linux
Explor directory structure and view lots of scaleable vector graphics (SVG) files as a thumbnail list. Change thumbnail size. Rendering ist done by apache batik libraries 1.7 which you need to download too.
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BoulderALE is an RNA alignment editor, which allows for the annotation of basepairs, annotation and collapsing of features (horizontal) and sequences (vertical), along with 2D display of sequences and base composition given a secondary structure.
The RESTful way to develop Adobe Flex and AIR applications
RestfulX is a framework designed to streamline development of Adobe Flex and AIR applications by providing a RESTful architecture that simplifies server communication within Flex-based rich internet applications. Integrate with Ruby On Rails, Merb or Sinatra applications that use ActiveRecord, DataMapper, CouchRest, ActiveCouch and so on. Communicate between your Flex/AIR Rich Internet Application and service providers using AMF, XML or JSON. Persist your data directly in Adobe AIR SQLite...
This TrieMap can be used as dictionary or as a Map with String keys. It uses a node structure to store values to keys. You can search for an object and get the path, get all objects on a path or get all objects behind a path.
OSCAR (Open Source Chemistry Analysis Routines) is software for the semantic annotation of chemistry papers. The modules OPSIN (a name to structure converter) and ChemTok (a tokeniser for chemical text) are also available as standalone libraries.
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B-Tree implemented in Common Lisp. Stores key/value pairs onto disk based data structure. Current implementation has been tested with SBCL. Project was originally at alien-consader.org but is now made available at SourceForge.
Delta Console provides a command shell for managing and controlling Deltapy applications. Delta Console have a very simple interface, and can execute any available command on the Application, as simple as invoking a function from the Python's shell.
MathJax is a modular javascript framework for including mathematics in web pages. It can take input in various formats, like TeX and MathML, and can produce output in various forms, such as MathML or HTML-with-CSS. Components are loaded as needed.
This is a C++ library to create and simulate standard and hybrid bond graph. The library support XML input and output of the bond graph structure. Graphic representation of the bond graph in SVG are generated using the Graphviz library.
PHFTP ( PHP HTTP FTP ) is a simple and fast Web FTP application. You can upload, download and administer files on FTP servers without a local FTP client, even if you are behind firewalls and proxies.
FSCMS stands for File System Content Management System. It is a CMS implemented on a intuitive files/directories structure, providing both ease-of-use and a comprehensive set of command-line tools to perform various tasks (content generation, backup)
Amazingly simple, amazingly useful, personal database software (based on the windows-only Treepad program). Simply store your notes in a single tree structure. Excellent for lists, outlines, document planning...
This tool allows people to do semantic structure analysis digitally. Java is required to run the software. Instructions are found under the Help menu. This is a tweaked version of the Discourse Analysis Tool at http://datool.sourceforge.net.
The BLEU project was created with C++, OGRE, RBGUI, and OIS.
Obviously the code structure is not the most ideal imaginable, but I was hard pressed for time when I wrote it.
If I were to write it today, it would be completely different. As you can see in my GPE documentation, I no longer use the friend keyword quite so liberally (In fact, haven't used it once in GPE). The naming convention I have used is a bit wonky as well.
It is a tool developed to get as much information as possible from the source of the web page in any format like XML, XHTML, SVG, XST. It can edit the page, transform, validate and show the code in tree, graphical view to know the design structure.
Here we describe the algorithm RNAborMEA, which for an arbitrary initial structure S0 and for all values 0 < k < n, computes the secondary structure MEA(k), having maximum expected accuracy over all k-neighbors of S0.
YaSeTo implements a modification of the widely used Sankoff-Algorithm for sequence/structure alignments of RNA sequences. It is suitable for genome-wide ncRNA gene finding, in case the ncRNA exhibits a conserved secondary structure.
An image-masking application which revolves around the new user-friendly and interactive use of the standard 'magic wand' tool. Features an extensive preview system, interactive parameter adjustment and a node-based structure.