Search Results for "structure"
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Showing 329 open source projects for "structure"
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iCn3D
Web-based protein structure viewer and analysis tool
"I see in 3D" (iCn3D) Structure Viewer is not only a web-based 3D viewer, but also a structure analysis tool interactively or in the batch mode using NodeJS scripts based on the npm package icn3d. iCn3D synchronizes the display of 3D structure, 2D interaction, and 1D sequences and annotations. Users' custom displays can be saved in a short URL or a PNG image. -
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COLMAP
Structure-from-Motion and Multi-View Stereo
COLMAP is a general-purpose Structure-from-Motion (SfM) and Multi-View Stereo (MVS) pipeline with a graphical and command-line interface. It offers a wide range of features for the reconstruction of ordered and unordered image collections. The software is licensed under the new BSD license. -
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Il2CppDumper
Unity il2cpp reverse engineer
...It supports Unity versions from 5.3 through 2022.2, according to the repository documentation. Il2CppDumper can generate helper scripts for IDA, Ghidra, and Binary Ninja, along with structure headers and JSON outputs. It is best suited for authorized reverse engineering, interoperability research, security analysis, modding research, and educational binary analysis. -
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OpenFermion
The electronic structure package for quantum computers
...Among other functionalities, this version features data structures and tools for obtaining and manipulating representations of fermionic and qubit Hamiltonians. For more information, see our release paper. Currently, OpenFermion is tested on Mac, Windows, and Linux. We recommend using Mac or Linux because the electronic structure plugins are only compatible on these platforms. However, for those who would like to use Windows, or for anyone having other difficulties with installing OpenFermion or its plugins, we have provided a Docker image and usage instructions in the docker folder. The Docker image provides a virtual environment with OpenFermion and select plugins pre-installed. ... -
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Cookiecutter Data Science
Project structure for doing and sharing data science work
A logical, reasonably standardized, but flexible project structure for doing and sharing data science work. When we think about data analysis, we often think just about the resulting reports, insights, or visualizations. While these end products are generally the main event, it's easy to focus on making the products look nice and ignore the quality of the code that generates them. Because these end products are created programmatically, code quality is still important! -
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CloudCompare
CloudCompare main repository
...It was originally designed to perform comparison between two 3D points clouds (such as the ones obtained with a laser scanner) or between a point cloud and a triangular mesh. It relies on an octree structure that is highly optimized for this particular use-case. It was also meant to deal with huge point clouds (typically more than 10 million points, and up to 120 million with 2 GB of memory). -
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WaterLily.jl
Fast and simple fluid simulator in Julia
WaterLily.jl is a fluid dynamics simulation package in Julia that uses lattice Boltzmann methods (LBM) to simulate incompressible flows and fluid-structure interactions in two dimensions. It is designed for easy use and rapid prototyping of physical systems involving particles, obstacles, and hydrodynamic forces. The package is well-suited for educational purposes, computational physics research, and lightweight fluid simulations. -
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AlohaMini
Open-Source Dual-Arm Mobile Robot with Motorized Lift
AlohaMini is a lightweight self-hostable productivity and note-taking platform designed to help individuals organize thoughts, tasks, and knowledge in a fast, minimal interface that avoids unnecessary complexity. It combines hierarchical notebooks, rich text editing, and tagging, allowing users to structure information the way they think and refine that structure over time. The platform focuses on speed and responsiveness, with a UI that loads instantly and feels smooth even on modest hardware, making it ideal for both desktop and small server deployments. AlohaMini also supports internal linking between notes, enabling a web-like connected knowledge space that grows organically as users create and connect ideas. ... -
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CADAM
CADAM is the open source text-to-CAD web application
CADAM is an open-source “text-to-CAD” web application that turns natural-language prompts into parametric 3D models, targeting a workflow where you describe what you want and the system produces editable geometry. It is designed around a browser-first experience, so users can iterate quickly without installing a heavyweight desktop CAD suite for every experiment. A key idea is that the generated output is parametric and scriptable, enabling repeatable edits and variations rather than a... -
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Manim Python
Animation engine for explanatory math videos
Manim is a Python library and animation engine designed for creating precise, programmatic mathematical visuals—famously used by 3Blue1Brown. It enables developers and educators to script animations using code and produce high-quality explanatory math videos. -
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Darling
Darwin/macOS emulation layer for Linux
...It implements macOS libraries and frameworks, enabling macOS binaries to execute on Linux. Darling has support for DPREFIXes, which are very similar to WINEPREFIXes. They are virtual “chroot” environments with an macOS-like filesystem structure, where you can install software safely. The default DPREFIX location is ~/.darling, but this can be changed by exporting an identically named environment variable. A prefix is automatically created and initialized on first use. Please note that we use overlayfs for creating prefixes, and so we cannot support putting prefix on a filesystem like NFS or eCryptfs. ... -
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Open X-Embodiment
Unified open dataset enabling cross-embodiment learning for robotics
Open X-Embodiment is a large-scale collaborative initiative led by Google DeepMind to unify robotic learning datasets into a consistent and standardized format, simplifying access and usage across the robotics research community. Its primary goal is to make all available open-source robotic data interoperable by representing them using the RLDS (Reinforcement Learning Dataset Structure) episode format. This enables seamless integration for training, evaluation, and model development across diverse robotic tasks and embodiments. The dataset aggregates contributions from multiple open-source robotic projects, all harmonized under a single unified data schema. The repository also provides Colab notebooks for dataset visualization, batching, and model inference, along with pretrained model checkpoints such as RT-1-X, a multitask robotic transformer model trained on this data. -
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Translation Agent
Agentic translation using reflection workflow
...Instead of asking a language model for a single direct translation, it first generates a translation, then asks the model to critique it, and finally uses that critique to produce a stronger version. This structure makes the system more steerable than a traditional translation pipeline. Users can adjust prompts to control tone, formality, terminology, idiom handling, and regional language choices. The project includes example scripts and a simple Python interface for translating between source and target languages. It is useful for researchers, developers, and localization teams exploring how LLM-based workflows can produce better, more customizable translations. -
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AMBIT:Chemical Structure DB&Web Service
Chemical structures database & machine learning with web services API
AMBIT offers a cheminformatics data management for chemical substances, structures and nanomaterials. Flexible structure, similarity and study queries storage, descriptor calculation and predictive models building via REST web services.User interface for creating read across assessment and generating reports, aligned with regulatory and industrial requirements. Command line applications also available. Integration with third party tools and databases. -
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CycleGAN and pix2pix in PyTorch
Image-to-Image Translation in PyTorch
CycleGAN and pix2pix in PyTorch repository is a PyTorch implementation of two influential image-to-image translation frameworks: CycleGAN (for unpaired translation) and pix2pix (for paired translation). This repo gives developers and researchers a convenient, modern (PyTorch-based) platform to train and test these methods — supporting both paired datasets (input to output) and unpaired datasets (domain-to-domain) with minimal changes. The code supports standard training and inference... -
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JeeSite
A basic enterprise information development platform
JeeSite is a high-efficiency, high-performance, and strong security open source Java EE rapid development platform based on a number of excellent open source projects, highly integrated and packaged. JeeSite is the best basic platform solution for you to quickly complete your project. JeeSite is the best study case for you to learn the Java platform. JeeSite is also the best assistant for private work. JeeSite is a Java-based development platform built on the Spring Framework, with Spring... -
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EDAUtils Converters
Free converters across IP-XACT Verilog VHDL Liberty SystemC
verilog2vhdl : Tool to convert Verilog into VHDL by keeping the same structure and function for ease of correlation. vhdl2verilog : Tool to convert VHDL into Verilog by keeping the same structure and function for ease of correlation verilog2ipxact :Tool to create IP-XACT Component or Design from a Verilog Module. ipxact2verilog : Tool to convert IP-XACT into Verilog module ipxactinterface2svinterface : Converts IP-XACT Bus Definition / BusInterface into System Verilog Interface verilog2lib : Create Liberty .lib library from verilog module lib2verilog : Converts Liberty .lib Cells into empty verilog modules verilog2systemc : Tool to convert Verilog into SystemC keeping the original structure as much as possible. ... -
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SAGA - System for Automated Geoscientific Analyses - is a Geographic Information System (GIS) software with immense capabilities for geodata processing and analysis. SAGA is programmed in the object oriented C++ language and supports the implementation of new functions with a very effective Application Programming Interface (API). Functions are organised as modules in framework independent Module Libraries and can be accessed via SAGA’s Graphical User Interface (GUI) or various scripting...
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QTPN
Visualization, electronic structure and multicomponent calculations
C/C++ code with GUI, supported on QT library for handling of windows and OpenGL/GLU for display of graphics. It is capable of dealing with plotting, electronic structure calculation and multicomponent calculations. Current version reads XYZ and deMon output files. Displays image of geometry, atomic orbitals, molecular orbitals, density and Fukui functions in a few different formats. In situ SCF Hartree-Fock calculations available. -
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ANYstructure
GUI based steel structure calculation and optimization tool.
GUI based steel optimization tool for naval architects and structural engineers. Calculate and optimize the following: Minimum plate thickness (DNV/DNVGL-OS-C101) Minimum section modulus of stiffener/plate (DNVGL-OS-C101) Minimum shear area (DNVGL-OS-C101) Buckling (DNVGL-RP-C201) Fatigue for plate/stiffener connection (DNVGL-RP-C203) Compartments (tank pressures) are created automatically. Pressures on external hull (or any other generic location) is defined by specifying... -
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ShelXle
ShelXle is a Qt GUI for SHELXL
ShelXle combines an editor with syntax highlighting for the SHELXL-associated .ins (input) and .res (output) files with an interactive graphical display for visualization of a three-dimensional structure including the electron density (Fo) and difference density (Fo-Fc) maps. See J. Appl. Cryst. (2011). 44, 1281–1284. for details. -
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OSRA is a utility designed to convert graphical representations of chemical structures and reactions, as they appear in journal articles, patent documents, textbooks, trade magazines etc., into SMILES or SD file format- a computer recognizable molecular structure You can find links to the binary executables here: https://sourceforge.net/p/osra/wiki/Download/
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CEFT/E-Space
This work did not begin with a theory. It began with a question.
...For years, physics, philosophy, computation, and consciousness studies have circled the same paradoxes: How can something arise from nothing? Why does the vacuum have structure? Why do infinities appear where our theories should be smooth? Why does awareness feel irreducible? These questions were not failures of mathematics. They were failures of ontology — the quiet assumption that space is a container, that the vacuum is empty, that structure sits in something rather than creating the very medium it appears to inhabit. ... -
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Jmol
An interactive viewer for three-dimensional chemical structures.
Over 1,000,000 page views per month. Jmol/JSmol is a molecular viewer for 3D chemical structures that runs in four independent modes: an HTML5-only web application utilizing jQuery, a Java applet, a stand-alone Java program (Jmol.jar), and a "headless" server-side component (JmolData.jar). Jmol can read many file types, including PDB, CIF, SDF, MOL, PyMOL PSE files, and Spartan files, as well as output from Gaussian, GAMESS, MOPAC, VASP, CRYSTAL, CASTEP, QuantumEspresso, VMD, and many other...